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Report for CCDS56060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56060.1 Public Homo sapiens 18 DTNA 24 110 108 CCDS HistoryNCBI Gene:1837Re-query CCDS DB by CCDS ID:56060.1Re-query CCDS DB by GeneID:1837See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56060.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000554864.7 ENSP00000451516.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554864.7Link to Ensembl Protein Viewer:ENSP00000451516.2Re-query CCDS DB by Nucleotide ID:ENST00000554864Re-query CCDS DB by Protein ID:ENSP00000451516
Original member Current member EBI ENST00000684734.1 ENSP00000506928.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684734.1Link to Ensembl Protein Viewer:ENSP00000506928.1Re-query CCDS DB by Nucleotide ID:ENST00000684734Re-query CCDS DB by Protein ID:ENSP00000506928
Original member Current member EBI ENST00000684610.1 ENSP00000508348.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684610.1Link to Ensembl Protein Viewer:ENSP00000508348.1Re-query CCDS DB by Nucleotide ID:ENST00000684610Re-query CCDS DB by Protein ID:ENSP00000508348
Original member Current member NCBI NM_001128175.2 NP_001121647.1 Accepted alive Link to Nucleotide Sequence:NM_001128175.2Link to Protein Sequence:NP_001121647.1Re-query CCDS DB by Nucleotide ID:NM_001128175Re-query CCDS DB by Protein ID:NP_001121647Link to BLAST:NP_001121647.1
Original member Current member NCBI NM_001386776.1 NP_001373705.1 Accepted alive Link to Nucleotide Sequence:NM_001386776.1Link to Protein Sequence:NP_001373705.1Re-query CCDS DB by Nucleotide ID:NM_001386776Re-query CCDS DB by Protein ID:NP_001373705Link to BLAST:NP_001373705.1
Original member Current member NCBI NM_001386777.1 NP_001373706.1 Accepted alive Link to Nucleotide Sequence:NM_001386777.1Link to Protein Sequence:NP_001373706.1Re-query CCDS DB by Nucleotide ID:NM_001386777Re-query CCDS DB by Protein ID:NP_001373706Link to BLAST:NP_001373706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121647.1 371 Q9Y4J8-9 371 100% 0 0
NP_001373705.1 371 Q9Y4J8-9 371 100% 0 0
NP_001373706.1 371 Q9Y4J8-9 371 100% 0 0

Chromosomal Locations for CCDS 56060.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 34755977 34756043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34765961 34766041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34794037 34794250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34806219 34806304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34811959 34812113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34815909 34816014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34818164 34818330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34820791 34820915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34827593 34827676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34829041 34829071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGATTGAAGATAGTGGGAAAAGAGGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGG
CTCAAGATCTGGATCGCATCCGACTCTCCACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAA
ATGCAATTTGCACCTGGTGGACATATGGAATGTCATAGAAGCATTGCGGGAAAATGCTCTGAACAACCTG
GACCCAAACACTGAACTCAACGTGTCCCGCTTAGAGGCTGTGCTCTCCACTATTTTTTACCAGCTCAACA
AACGGATGCCAACCACTCACCAAATCCATGTGGAGCAGTCCATCAGCCTCCTCCTTAACTTCCTGCTTGC
AGCGTTTGATCCGGAAGGCCATGGTAAAATTTCAGTATTTGCTGTCAAAATGGCTTTAGCCACATTGTGT
GGAGGGAAGATCATGGACAAATTAAGATATATTTTCTCAATGATTTCTGACTCCAGTGGGGTGATGGTTT
ATGGACGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACGGCAGTTTTTGAAGGTCCTTCATT
TGGTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCCAACAGAAAAAAGTCACGTTAAATGGTTTCTTG
GACACGCTTATGTCAGATCCTCCCCCGCAGTGTCTGGTCTGGTTGCCTCTTCTGCATCGACTAGCAAATG
TGGAAAATGTCTTCCATCCGGTTGAGTGTTCCTACTGCCACAGTGAGAGTATGATGGGATTTCGCTACCG
ATGCCAACAGTGTCACAATTACCAGCTCTGTCAGGACTGCTTCTGGAGGGGACATGCCGGTGGTTCTCAT
AGCAACCAGCACCAAATGAAAGAGTACACGTCATGGAAATCACCTGCTAAGAAGCTGACTAATGCATTAA
GCAAGTCCCTGAGCTGTGCTTCCAGCCGTGAACCTTTGCACCCCATGTTCCCAGATCAGCCTGAGAAGCC
ACTCAACTTGGCTCACATCGTGCCTCCCAGACCTGTAACCAGCATGAACGACACCCTGTTCTCCCACTCT
GTTCCCTCCTCAGGAAGTCCTTTTATTACCAGGAGCTCGGACGGTGCTTTTGGTGGATGCGTCTAG

Translation (371 aa):
MIEDSGKRGNTMAERRQLFAEMRAQDLDRIRLSTYRTACKLRFVQKKCNLHLVDIWNVIEALRENALNNL
DPNTELNVSRLEAVLSTIFYQLNKRMPTTHQIHVEQSISLLLNFLLAAFDPEGHGKISVFAVKMALATLC
GGKIMDKLRYIFSMISDSSGVMVYGRYDQFLREVLKLPTAVFEGPSFGYTEQSARSCFSQQKKVTLNGFL
DTLMSDPPPQCLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSH
SNQHQMKEYTSWKSPAKKLTNALSKSLSCASSREPLHPMFPDQPEKPLNLAHIVPPRPVTSMNDTLFSHS
VPSSGSPFITRSSDGAFGGCV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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