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Report for CCDS56135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56135.1 Public Homo sapiens 2 BCL2L11 24 110 108 CCDS HistoryNCBI Gene:10018Re-query CCDS DB by CCDS ID:56135.1Re-query CCDS DB by GeneID:10018See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 56135.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000437029.5 ENSP00000412892.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437029.5Link to Ensembl Protein Viewer:ENSP00000412892.1Re-query CCDS DB by Nucleotide ID:ENST00000437029Re-query CCDS DB by Protein ID:ENSP00000412892
Original member Current member EBI ENST00000622509.4 ENSP00000482175.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622509.4Link to Ensembl Protein Viewer:ENSP00000482175.1Re-query CCDS DB by Nucleotide ID:ENST00000622509Re-query CCDS DB by Protein ID:ENSP00000482175
Original member Current member NCBI NM_001204108.1 NP_001191037.1 Accepted alive Link to Nucleotide Sequence:NM_001204108.1Link to Protein Sequence:NP_001191037.1Re-query CCDS DB by Nucleotide ID:NM_001204108Re-query CCDS DB by Protein ID:NP_001191037Link to BLAST:NP_001191037.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191037.1 172 O43521-8 172 100% 0 0

Chromosomal Locations for CCDS 56135.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 111123746 111124139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111150044 111150147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 111161419 111161439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCAAAGCAACCTTCTGATGTAAGTTCTGAGTGTGACCGAGAAGGTAGACAATTGCAGCCTGCGGAGA
GGCCTCCCCAGCTCAGACCTGGGGCCCCTACCTCCCTACAGACAGAGCCACAAGGTAATCCTGAAGGCAA
TCACGGAGGTGAAGGGGACAGCTGCCCCCACGGCAGCCCTCAGGGCCCGCTGGCCCCACCTGCCAGCCCT
GGCCCTTTTGCTACCAGATCCCCGCTTTTCATCTTTATGAGAAGATCCTCCCTGCTGTCTCGATCCTCCA
GTGGGTATTTCTCTTTTGACACAGACAGGAGCCCAGCACCCATGAGTTGTGACAAATCAACACAAACCCC
AAGTCCTCCTTGCCAGGCCTTCAACCACTATCTCAGTGCAATGGCTTCCATGAGGCAGGCTGAACCTGCA
GATATGCGCCCAGAGATATGGATCGCCCAAGAGTTGCGGCGTATTGGAGACGAGTTTAACGCTTACTATG
CAAGGAGGATGCCTCTTCCACCTGATTAA

Translation (172 aa):
MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASP
GPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMASMRQAEPA
DMRPEIWIAQELRRIGDEFNAYYARRMPLPPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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