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Report for CCDS5636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5636.1 Public Homo sapiens 7 CASD1 24 110 108 CCDS HistoryNCBI Gene:64921Re-query CCDS DB by CCDS ID:5636.1Re-query CCDS DB by GeneID:64921See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5636.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297273.9 ENSP00000297273.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297273.9Link to Ensembl Protein Viewer:ENSP00000297273.4Re-query CCDS DB by Nucleotide ID:ENST00000297273Re-query CCDS DB by Protein ID:ENSP00000297273
Original member Current member NCBI NM_022900.5 NP_075051.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022900.5Link to Protein Sequence:NP_075051.4Re-query CCDS DB by Nucleotide ID:NM_022900Re-query CCDS DB by Protein ID:NP_075051Link to BLAST:NP_075051.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075051.4 797 Q96PB1 797 100% 0 0

Chromosomal Locations for CCDS 5636.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 94510085 94510217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94517560 94517656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94518203 94518323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94527162 94527206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94528188 94528250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94533205 94533249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94533679 94533802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94535309 94535523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94537472 94537894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94538967 94539056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94544411 94544530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94545545 94545701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94547096 94547175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94549533 94549634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94551338 94551478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94552350 94552427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94554483 94554575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 94555492 94555758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2394 nt):
ATGGCGGCTCTGGCCTACAACCTGGGCAAGCGGGAGATCAACCACTACTTCAGCGTGAGGAGCGCCAAGG
TGCTGGCGCTGGTGGCCGTGCTGCTGCTCGCAGCGTGCCACCTCGCCTCCCGCCGCTACCGAGGCAATGA
TTCGTGTGAATACCTTCTCTCAAGTGGCAGATTTCTTGGAGAGAAAGTTTGGCAACCTCACAGTTGTATG
ATGCATAAATACAAAATCAGTGAAGCAAAGAACTGCCTTGTAGATAAACATATTGCATTTATTGGAGATT
CCAGAATTCGTCAATTGTTTTATTCTTTTGTAAAAATAATTAATCCCCAATTCAAAGAAGAAGGAAATAA
GCATGAAAACATTCCTTTTGAAGACAAGACTGCATCAGTTAAAGTGGATTTTCTGTGGCATCCTGAAGTT
AATGGTTCTATGAAACAGTGTATCAAAGTGTGGACTGAGGATTCCATTGCAAAGCCACATGTGATTGTAG
CAGGAGCTGCCACATGGTCCATCAAGATTCACAATGGTAGCAGTGAAGCGCTTTCTCAATATAAAATGAA
CATCACCTCCATAGCACCACTTTTAGAAAAATTGGCAAAGACTAGTGATGTTTATTGGGTCTTACAAGAT
CCTGTTTATGAAGATCTATTAAGTGAAAATAGGAAGATGATCACTAATGAGAAGATAGATGCTTACAATG
AAGCTGCAGTCAGTATTTTGAATAGTAGCACCAGAAATTCTAAATCAAATGTTAAGATGTTCAGTGTTTC
CAAATTAATTGCTCAAGAAACCATCATGGAATCTTTGGATGGCTTACATCTTCCTGAATCGAGCAGAGAA
ACTACTGCAATGATTCTTATGAATGTGTATTGCAATAAGATTTTGAAGCCTGTAGATGGGTCCTGTTGTC
AACCTCGGCCTCCTGTTACTCTCATACAGAAGCTAGCTGCTTGTTTTTTCACTTTATCTATTATCGGATA
TTTAATTTTTTACATAATTCATCGTAATGCTCATCGGAAGAATAAGCCGTGTACTGATTTGGAAAGTGGA
GAGGAAAAGAAAAATATTATCAATACCCCTGTGTCTTCATTAGAAATACTTTTACAATCTTTCTGCAAAC
TTGGCCTGATTATGGCATATTTCTATATGTGTGACCGTGCAAATCTGTTCATGAAGGAAAACAAATTTTA
TACACATTCATCTTTCTTTATTCCAATTATCTACATTTTGGTTTTGGGAGTATTTTATAATGAAAATACT
AAAGAGACTAAAGTATTAAATAGAGAACAAACAGACGAATGGAAAGGCTGGATGCAACTTGTGATTTTGA
TTTATCACATTTCTGGAGCAAGTACATTTTTGCCTGTATACATGCACATTCGAGTTCTGGTTGCTGCATA
TTTATTTCAGACAGGGTATGGGCATTTCTCATACTTTTGGATAAAAGGAGATTTTGGAATCTATAGAGTA
TGTCAGGTTTTATTTCGTCTCAATTTCCTGGTAGTGGTGTTATGTATAGTAATGGATCGACCTTATCAAT
TCTATTACTTTGTCCCCTTGGTCACTGTATGGTTCATGGTCATATATGTTACTTTAGCACTATGGCCACA
AATAATCCAAAAAAAAGCAAACGGAAATTGTTTCTGGCATTTTGGCTTACTGTTGAAACTAGGCTTTTTG
CTGTTATTCATATGTTTTTTGGCATATTCTCAGGGTGCATTTGAGAAGATCTTTTCTCTTTGGCCATTGT
CCAAGTGTTTTGAACTGAAAGGGAATGTATATGAATGGTGGTTCAGATGGAGGTTAGACCGTTATGTAGT
TTTCCACGGAATGCTGTTTGCTTTTATTTATCTGGCTTTGCAGAAGCGTCAAATACTTTCTGAAGGAAAG
GGTGAACCTCTTTTTTCAAACAAAATTTCAAATTTTCTGTTGTTTATTTCAGTAGTTTCTTTCTTGACCT
ATTCCATCTGGGCTAGCAGTTGTAAAAACAAAGCAGAGTGCAATGAACTCCATCCGTCTGTTTCTGTGGT
ACAGATTTTAGCCTTCATCCTAATAAGAAACATCCCTGGATATGCCCGTTCAGTTTACAGTTCATTTTTT
GCTTGGTTTGGAAAAATTTCATTAGAGCTATTTATTTGCCAGTATCACATATGGCTGGCAGCGGACACAA
GGGGTATCTTGGTACTGATACCTGGAAACCCTATGCTCAACATCATTGTCAGCACTTTCATATTTGTTTG
TGTGGCACATGAAATTTCTCAGATCACTAATGATCTTGCACAGATTATTATTCCTAAAGATAACTCATCT
CTCTTGAAAAGGTTGGCATGTATAGCTGCATTTTTTTGTGGACTCCTCATCTTATCATCCATTCAAGATA
AATCAAAACATTAG

Translation (797 aa):
MAALAYNLGKREINHYFSVRSAKVLALVAVLLLAACHLASRRYRGNDSCEYLLSSGRFLGEKVWQPHSCM
MHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKHENIPFEDKTASVKVDFLWHPEV
NGSMKQCIKVWTEDSIAKPHVIVAGAATWSIKIHNGSSEALSQYKMNITSIAPLLEKLAKTSDVYWVLQD
PVYEDLLSENRKMITNEKIDAYNEAAVSILNSSTRNSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRE
TTAMILMNVYCNKILKPVDGSCCQPRPPVTLIQKLAACFFTLSIIGYLIFYIIHRNAHRKNKPCTDLESG
EEKKNIINTPVSSLEILLQSFCKLGLIMAYFYMCDRANLFMKENKFYTHSSFFIPIIYILVLGVFYNENT
KETKVLNREQTDEWKGWMQLVILIYHISGASTFLPVYMHIRVLVAAYLFQTGYGHFSYFWIKGDFGIYRV
CQVLFRLNFLVVVLCIVMDRPYQFYYFVPLVTVWFMVIYVTLALWPQIIQKKANGNCFWHFGLLLKLGFL
LLFICFLAYSQGAFEKIFSLWPLSKCFELKGNVYEWWFRWRLDRYVVFHGMLFAFIYLALQKRQILSEGK
GEPLFSNKISNFLLFISVVSFLTYSIWASSCKNKAECNELHPSVSVVQILAFILIRNIPGYARSVYSSFF
AWFGKISLELFICQYHIWLAADTRGILVLIPGNPMLNIIVSTFIFVCVAHEISQITNDLAQIIIPKDNSS
LLKRLACIAAFFCGLLILSSIQDKSKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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