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Report for CCDS56425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56425.1 Public Homo sapiens 6 ETV7 24 110 108 CCDS HistoryNCBI Gene:51513Re-query CCDS DB by CCDS ID:56425.1Re-query CCDS DB by GeneID:51513See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56425.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339796.9 ENSP00000342260.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339796.9Link to Ensembl Protein Viewer:ENSP00000342260.5Re-query CCDS DB by Nucleotide ID:ENST00000339796Re-query CCDS DB by Protein ID:ENSP00000342260
Original member Current member NCBI NM_001207035.2 NP_001193964.1 Accepted alive Link to Nucleotide Sequence:NM_001207035.2Link to Protein Sequence:NP_001193964.1Re-query CCDS DB by Nucleotide ID:NM_001207035Re-query CCDS DB by Protein ID:NP_001193964Link to BLAST:NP_001193964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193964.1 317 Q9Y603-5 317 100% 0 0

Chromosomal Locations for CCDS 56425.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36354642 36354687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36366875 36366975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36368929 36369071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36371330 36371560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36373453 36373578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36375871 36376035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36385534 36385669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36387536 36387541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGCAGGAGGGAGAATTGGCTATTTCTCCTATAAGCCCTGTGGCAGCCATGCCTCCCCTAGGCACCCACG
TGCAAGCCAGATGTGAAGCTCAAATTAACCTGCTGGGTGAAGGGGGGATCTGCAAGCTGCCAGGAAGACT
CCGCATCCAGCCCGCACTGTGGAGCAGGGAGGACGTGCTGCACTGGCTGCGCTGGGCAGAGCAGGAGTAC
TCTCTGCCATGCACCGCGGAGCACGGGTTCGAGATGAACGGACGCGCCCTCTGCATCCTCACCAAGGACG
ACTTCCGGCACCGTGCGCCCAGCTCAGGTGACGTCCTGTATGAGCTGCTCCAGTACATCAAGACCCAGCG
GCGAGCCCTGGTGTGTGGGCCCTTTTTTGGAGGGATCTTCAGGCTGAAGACGCCCACCCAGCACTCTCCA
GTCCCCCCGGAAGAGGTGACTGGCCCCTCTCAGATGGACACCCGAAGGGGCCACCTGCTGCAGCCACCAG
ACCCAGGGCTTACCAGCAACTTCGGCCACCTGGATGACCCTGGCCTGGCAAGGTGGACCCCTGGCAAGGA
GGAGTCCCTCAACTTATGTCACTGTGCAGAGCTCGGCTGCAGGACCCAGGGGGTCTGTTCCTTCCCCGCG
ATGCCGCAGGCCCCCATTGACGGCAGGATCGCTGACTGCCGCCTGCTGTGGGATTACGTGTATCAGCTGC
TCCTTGATACCCGATATGAGCCCTACATCAAGTGGGAAGACAAGGACGCCAAGATCTTCCGAGTTGTGGA
TCCAAATGGGCTCGCCAGACTCTGGGGAAATCACAAGAACCGGGTGAACATGACCTACGAGAAGATGTCT
CGTGCCCTGCGCCACTATTATAAGCTTAATATCATTAAGAAGGAACCGGGGCAGAAACTCCTGTTCAGAA
ATGGACTTCAGCTGATCTTCATATTCATATGGAGTTTCCAGTGA

Translation (317 aa):
MQEGELAISPISPVAAMPPLGTHVQARCEAQINLLGEGGICKLPGRLRIQPALWSREDVLHWLRWAEQEY
SLPCTAEHGFEMNGRALCILTKDDFRHRAPSSGDVLYELLQYIKTQRRALVCGPFFGGIFRLKTPTQHSP
VPPEEVTGPSQMDTRRGHLLQPPDPGLTSNFGHLDDPGLARWTPGKEESLNLCHCAELGCRTQGVCSFPA
MPQAPIDGRIADCRLLWDYVYQLLLDTRYEPYIKWEDKDAKIFRVVDPNGLARLWGNHKNRVNMTYEKMS
RALRHYYKLNIIKKEPGQKLLFRNGLQLIFIFIWSFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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