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Report for CCDS56470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56470.1 Public Homo sapiens 7 SNX10 24 110 108 CCDS HistoryNCBI Gene:29887Re-query CCDS DB by CCDS ID:56470.1Re-query CCDS DB by GeneID:29887See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409838.1 ENSP00000386540.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409838.1Link to Ensembl Protein Viewer:ENSP00000386540.1Re-query CCDS DB by Nucleotide ID:ENST00000409838Re-query CCDS DB by Protein ID:ENSP00000386540
Original member Current member NCBI NM_001199838.2 NP_001186767.1 Accepted alive Link to Nucleotide Sequence:NM_001199838.2Link to Protein Sequence:NP_001186767.1Re-query CCDS DB by Nucleotide ID:NM_001199838Re-query CCDS DB by Protein ID:NP_001186767Link to BLAST:NP_001186767.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186767.1 117 Q9Y5X0-2 117 100% 0 0

Chromosomal Locations for CCDS 56470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 26365087 26365145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26371821 26372033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26372491 26372572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGAACAATCGCCAGCACGTGGATCAGCGTCGCCAGGGTCTGGAAGATTTCCTCAGAAAAGTCCTACAGA
ATGCACTTTTGCTTTCAGATAGCAGCCTTCACCTCTTCTTACAGAGCCATCTGAATTCAGAAGACATTGA
GGCGTGTGTTTCTGGGCAGACTAAGTACTCTGTGGAAGAAGCAATTCACAAGTTTGCCTTAATGAATAGA
CGTTTCCCTGAAGAAGATGAAGAAGGAAAAAAAGAAAATGATATAGATTATGATTCAGAAAGTTCATCCT
CTGGGCTTGGACACAGTAGTGATGACAGCAGTTCACATGGATGTAAAGTAAATACAGCTCCGCAGGAATC
CTGA

Translation (117 aa):
MNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNR
RFPEEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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