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Report for CCDS56578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56578.1 Public Homo sapiens 9 ECM2 24 110 108 CCDS HistoryNCBI Gene:1842Re-query CCDS DB by CCDS ID:56578.1Re-query CCDS DB by GeneID:1842See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444490.6 ENSP00000393971.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444490.6Link to Ensembl Protein Viewer:ENSP00000393971.2Re-query CCDS DB by Nucleotide ID:ENST00000444490Re-query CCDS DB by Protein ID:ENSP00000393971
Original member Current member NCBI NM_001197296.2 NP_001184225.1 Accepted alive Link to Nucleotide Sequence:NM_001197296.2Link to Protein Sequence:NP_001184225.1Re-query CCDS DB by Nucleotide ID:NM_001197296Re-query CCDS DB by Protein ID:NP_001184225Link to BLAST:NP_001184225.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001184225.1 643 O94769-2 643 100% 0 0

Chromosomal Locations for CCDS 56578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 92494083 92494149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92500727 92501053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92502513 92502652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92505533 92505690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92509899 92510034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92512011 92512126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92514631 92515137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92517687 92517875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92522575 92522866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1932 nt):
ATGAAGATTGCAGTTTTGTTTTGTTTTTTTCTGCTTATCATTTTTCAAACTGACTTTGGAAAAAATGAAG
AAATTCCTAGGAAGCAAAGGAGGAAGATCTACCACAGAAGGTTGAGGAAAAGTTCAACCTCACACAAGCA
CAGATCAAACAGACAGCTTGGAATTCAGCAAACAACAGTTTTTACACCAGTAGCAAGACTTCCTATTGTT
AACTTTGATTATAGCATGGAGGAAAAGTTTGAATCCTTTTCAAGTTTTCCTGGAGTAGAATCAAGTTATA
ATGTGTTACCAGGAAAGAAGGGACACTGTTTGGTAAAGGGCATAACCATGTACAACAAAGCTGTGTGGTC
GCCTGAGCCCTGCACTACCTGCCTCTGCTCAGATGGAAGAGTTCTTTGTGATGAAACCATGTGCCATCCC
CAGAGGTGCCCCCAAACAGTTATACCTGAAGGGGAATGCTGCCCGGTCTGCTCCGCTACTGAACAAAGAG
AACCTACCAATTTACTTCATAAGCAACTGCCACCTCCTCAGGTGGGAATGGACCGAATAGTAAGAAAAGA
AGCACTTCAATCTGAGGAGGATGAAGAAGTGAAAGAAGAAGATACAGAGCAAAAGAGAGAGACCCCTGAA
TCTAGAAATCAGGGGCAACTTTACAGTGAGGGGGACAGCAGAGGAGGAGACAGAAAGCAGAGGCCTGGAG
AGGAGAGGAGGCTGGCACACCAGCAACAACGCCAAGGAAGGGAGGAGGAGGAGGATGAGGAGGAGGAGGG
TGAGGAGGGTGAGGAGGATGAGGAGGACGAGGAGGACCCGGTAAGAGGAGATATGTTCCGAATGCCCTCT
CGATCCCCGCTTCCTGCTCCTCCCAGAGGCACACTGCGCCTGCCAAGCGGGTGCTCTCTGTCCTACAGGA
CCATCAGCTGCATCAACGCCATGCTTACCCAGATACCACCGCTGACAGCACCACAGATAACAAGTCTGGA
GCTCACTGGCAATTCCATCGCCTCCATCCCAGATGAAGCATTTAATGGATTACCAAATTTGGAAAGGCTT
GATCTGAGTAAAAATAATATCACTTCTTCAGGCATAGGTCCAAAAGCATTCAAGCTTCTGAAGAAGTTAA
TGCGTTTGAATATGGATGGAAATAATTTGATACAGATTCCTTCACAATTGCCATCTACATTAGAAGAACT
TAAAGTCAATGAGAACAATCTTCAGGCTATCGATGAAGAAAGTTTATCAGACTTAAATCAGTTGGTCACC
TTAGAATTGGAAGGAAACAATCTCAGTGAAGCCAATGTCAATCCTTTAGCTTTCAAACCTTTGAAGAGCC
TAGCCTACTTGCGTCTGGGAAAAAATAAATTTAGAATTATACCGCAGGGTCTTCCTGGTTCTATTGAGGA
ATTATACCTAGAAAATAACCAAATTGAAGAAATAACTGAAATTTGTTTCAATCATACCAGAAAGATCAAT
GTCATTGTACTACGTTATAACAAAATTGAAGAAAATAGGATTGCTCCTTTAGCCTGGATAAATCAAGAAA
ATCTAGAATCCATTGATCTCTCCTACAACAAGCTCTATCACGTCCCGTCCTATCTACCCAAGTCCTTGCT
GCACCTAGTACTCCTTGGGAACCAGATTGAACGGATCCCTGGCTATGTGTTTGGCCACATGGAACCAGGC
CTGGAATACTTGTACCTGTCATTTAACAAACTTGCTGATGATGGCATGGACCGTGTCTCCTTCTATGGGG
CATATCATTCTCTGAGAGAATTATTTCTGGATCACAATGACTTAAAATCTATACCACCTGGGATACAAGA
AATGAAAGCACTACATTTTCTGAGGCTGAACAACAACAAGATACGCTGTGTTTCAGATGCTGTTCTAGAG
ACAGTGACAAACAGATCAGATGTGGCCTTTCCTCTCTGGTAG

Translation (643 aa):
MKIAVLFCFFLLIIFQTDFGKNEEIPRKQRRKIYHRRLRKSSTSHKHRSNRQLGIQQTTVFTPVARLPIV
NFDYSMEEKFESFSSFPGVESSYNVLPGKKGHCLVKGITMYNKAVWSPEPCTTCLCSDGRVLCDETMCHP
QRCPQTVIPEGECCPVCSATEQREPTNLLHKQLPPPQVGMDRIVRKEALQSEEDEEVKEEDTEQKRETPE
SRNQGQLYSEGDSRGGDRKQRPGEERRLAHQQQRQGREEEEDEEEEGEEGEEDEEDEEDPVRGDMFRMPS
RSPLPAPPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLELTGNSIASIPDEAFNGLPNLERL
DLSKNNITSSGIGPKAFKLLKKLMRLNMDGNNLIQIPSQLPSTLEELKVNENNLQAIDEESLSDLNQLVT
LELEGNNLSEANVNPLAFKPLKSLAYLRLGKNKFRIIPQGLPGSIEELYLENNQIEEITEICFNHTRKIN
VIVLRYNKIEENRIAPLAWINQENLESIDLSYNKLYHVPSYLPKSLLHLVLLGNQIERIPGYVFGHMEPG
LEYLYLSFNKLADDGMDRVSFYGAYHSLRELFLDHNDLKSIPPGIQEMKALHFLRLNNNKIRCVSDAVLE
TVTNRSDVAFPLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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