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Report for CCDS56635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56635.1 Public Mus musculus 1 Tex44 23 108 98 CCDS HistoryNCBI Gene:71863Re-query CCDS DB by CCDS ID:56635.1Re-query CCDS DB by GeneID:71863See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56635.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046004.5 ENSMUSP00000136430.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046004.5Link to Ensembl Protein Viewer:ENSMUSP00000136430.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000046004Re-query CCDS DB by Protein ID:ENSMUSP00000136430
Original member Current member NCBI NM_027966.1 NP_082242.1 Accepted alive Link to Nucleotide Sequence:NM_027966.1Link to Protein Sequence:NP_082242.1Re-query CCDS DB by Nucleotide ID:NM_027966Re-query CCDS DB by Protein ID:NP_082242Link to BLAST:NP_082242.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082242.1 530 Q9DA60 530 100% 0 0

Chromosomal Locations for CCDS 56635.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 86426371 86427963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGACCGCTGAGCCCTTGGAAGACCCTGAAGCCAGCAGCAGTTCTACACATGATCTTCCCGAGGCCTCCT
CGGACAACACAGCTGATGAAAACTCTGCAGATTTACCCGGAGAGTCCGAAGGACCAGACTCCCTGCCCGA
TGACGTCCCACCAGGAGACATCGACGAAGTGCTAGCTGAACATGATGTAGATCAAACCTCTGAGGCGAAA
GCCATCACCACAGAGCAAAATGAAGAGCAGGACTTCATTCGGACTGATACCTTCATGAGACAAGATGAGG
ACCTGCTCTCCAAGCAGATTTCCACCATCACGGAGAAAAATGTAGACCAGGCGTACATGCAGATTAACAC
AGTTTTTGAGCAGGATAAAGACCAGGCCTCCATACAGACTGCCACCTTGATGGGACAAGATGAAGACCAG
GCATTTTTGCAGATTGTCACTTCTGTGGGACAGAATAAAGATCAGGCCTCCATACAGACTGCCACCTTGA
TGGGACAGGATGAAGACCAGGCATCTTTGCAGATTGCCACTTCTGTGGGACAGAATAAAGATCAGCCCTC
CATGCAGATGGACACCTCCATAGGGCAAGATGTAGAGCCAGCCATCTCCACAGATACAGCAACTTCTGCA
GTCAAAGATGAGAGCCCAGATATTCCACATCAGGGCCAGGACAATCCTGAAGAGACCACATCTTTGCTGC
CCCAAGACCCAGGTATCCTGCAAGTGTTTGTGGGTTTCCAGAACCCAGTGTGGGACAGGCTAGCTGAAAA
CAACCGTACAAGTCGGAGCCGGACGGTTTCCCCGAGTGACTCCCAGACCCAGGAAAAGACACTGGGAAAC
CCGAATGTTCCAGAAGGGCAGCCAGTATTAGTTCCAAATGCTGACGTGCTATCTAACCTGCCTGAACATG
TCCAGACTTCGGTGGGAGCTGCTGACCCACCCCCTTCCGATACCAGTGGTCGCGACCCAGAACCCACGCC
TACCACCAACTCGGCCAAGCAGGAAGCTGAAGGGTTCAAGGCCTTGAACCCTGGGAGCAAAGCTAGATCG
CCAGGGCTGACCAGTGAGGATTCAGCTGCTGACTCAGGTATCCCACCGGATCCACCTGACCCAGGCTCCC
CAGGTGGCAGCCCACCCCACTCTCCAGATTTCTACCAGGTGGCCCTGGGCAGGAACCTTCTGGACCCCAA
TCTGTATAGACCTGATGTGGAGAACGACTACATGCGCTCCATGACCAGCCTGCTGGGTTGTGGAGAGGGC
TCCATCAGCTCCCTCACAGACATCCTGGTGTGGTCAGACACAGCCACACGCATGGGTGTGGCTGTGGGCA
TTCTGGCCTCGGGCTGCAGCTCTCCAGCTGACCGGCTACAAGACGAGGGTCCCCGCCTGCGGACTGTCGC
CAGCCTCTTGCGCAGCGCCAGGTCAGCTTTCTCCTCTGGGGTGATGTCTGGAACTGGCTCAGCCCTGCAC
TCTGTCACGCACCTGCTGGAGTCTGTGGAGAGACGGACTATGGAAGGCATCCGTTCAGCTATGCGCTACC
TGGCCCATCATCTCACCTCACGCTGGGCCCGCACTGGCCCCAGTGGTAACTAG

Translation (530 aa):
MTAEPLEDPEASSSSTHDLPEASSDNTADENSADLPGESEGPDSLPDDVPPGDIDEVLAEHDVDQTSEAK
AITTEQNEEQDFIRTDTFMRQDEDLLSKQISTITEKNVDQAYMQINTVFEQDKDQASIQTATLMGQDEDQ
AFLQIVTSVGQNKDQASIQTATLMGQDEDQASLQIATSVGQNKDQPSMQMDTSIGQDVEPAISTDTATSA
VKDESPDIPHQGQDNPEETTSLLPQDPGILQVFVGFQNPVWDRLAENNRTSRSRTVSPSDSQTQEKTLGN
PNVPEGQPVLVPNADVLSNLPEHVQTSVGAADPPPSDTSGRDPEPTPTTNSAKQEAEGFKALNPGSKARS
PGLTSEDSAADSGIPPDPPDPGSPGGSPPHSPDFYQVALGRNLLDPNLYRPDVENDYMRSMTSLLGCGEG
SISSLTDILVWSDTATRMGVAVGILASGCSSPADRLQDEGPRLRTVASLLRSARSAFSSGVMSGTGSALH
SVTHLLESVERRTMEGIRSAMRYLAHHLTSRWARTGPSGN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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