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Report for CCDS56656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56656.1 Public Mus musculus 1 Nit1 23 108 98 CCDS HistoryNCBI Gene:27045Re-query CCDS DB by CCDS ID:56656.1Re-query CCDS DB by GeneID:27045See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111289.7 ENSMUSP00000106920.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111289.7Link to Ensembl Protein Viewer:ENSMUSP00000106920.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111289Re-query CCDS DB by Protein ID:ENSMUSP00000106920
Original member NCBI NM_001242580.1 NP_001229509.1 Updated not alive Link to Nucleotide Sequence:NM_001242580.1Link to Protein Sequence:NP_001229509.1Re-query CCDS DB by Nucleotide ID:NM_001242580Re-query CCDS DB by Protein ID:NP_001229509
Current member NCBI NM_001242580.2 NP_001229509.1 Accepted alive Link to Nucleotide Sequence:NM_001242580.2Link to Protein Sequence:NP_001229509.1Re-query CCDS DB by Nucleotide ID:NM_001242580Re-query CCDS DB by Protein ID:NP_001229509Link to BLAST:NP_001229509.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229509.1 290 Q8VDK1-2 290 100% 0 0

Chromosomal Locations for CCDS 56656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171342531 171342797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171343438 171343563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171343694 171343827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171344064 171344167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171344288 171344529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGTCCTCATCAACTTCCTGGGAGCTGCCCCTGGTGGCTGTGTGCCAGGTAACATCAACACCAAACAAGC
AAGAGAACTTTAAAACATGTGCTGAGTTGGTTCAAGAGGCTGCCAGACTGGGTGCTTGCCTGGCCTTTCT
GCCTGAGGCATTTGACTTTATTGCACGAAACCCTGCCGAGACATTACTCCTGTCCGAACCACTGAATGGG
GATCTTTTGGGCCAATATAGCCAGCTTGCCAGGGAATGTGGAATCTGGCTGTCCTTGGGCGGTTTCCACG
AGCGTGGCCAAGACTGGGAGCAGAATCAGAAAATCTACAATTGTCATGTGCTTTTGAACAGCAAGGGATC
AGTAGTGGCCAGTTACAGGAAGACACATCTGTGCGATGTAGAGATCCCAGGTCAGGGGCCGATGAGAGAA
AGCAACTATACCAAGCCTGGAGGCACTCTTGAGCCACCTGTCAAGACACCGGCTGGCAAGGTTGGTCTAG
CAATCTGTTATGACATGCGGTTCCCTGAACTTTCTTTGAAATTGGCTCAAGCTGGGGCAGAAATACTTAC
TTATCCTTCAGCCTTTGGATCTGTTACAGGTCCAGCCCACTGGGAGGTGCTGCTGCGGGCCCGCGCCATT
GAATCTCAGTGCTATGTAATAGCAGCAGCGCAGTGTGGACGCCACCATGAAACAAGAGCAAGTTATGGCC
ATAGCATGGTGGTTGACCCGTGGGGCACAGTGGTGGCCCGCTGCTCCGAGGGACCAGGCCTCTGCCTTGC
TCGAATTGATCTCCACTTTCTACAACAGATGCGCCAACACCTGCCTGTGTTCCAGCACCGCAGACCTGAC
CTCTATGGCAGTCTGGGTCATCCACTCTCTTAA

Translation (290 aa):
MSSSTSWELPLVAVCQVTSTPNKQENFKTCAELVQEAARLGACLAFLPEAFDFIARNPAETLLLSEPLNG
DLLGQYSQLARECGIWLSLGGFHERGQDWEQNQKIYNCHVLLNSKGSVVASYRKTHLCDVEIPGQGPMRE
SNYTKPGGTLEPPVKTPAGKVGLAICYDMRFPELSLKLAQAGAEILTYPSAFGSVTGPAHWEVLLRARAI
ESQCYVIAAAQCGRHHETRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLHFLQQMRQHLPVFQHRRPD
LYGSLGHPLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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