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Report for CCDS56657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56657.1 Public Mus musculus 1 Cd84 23 108 98 CCDS HistoryNCBI Gene:12523Re-query CCDS DB by CCDS ID:56657.1Re-query CCDS DB by GeneID:12523See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56657.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135386.1 ENSMUSP00000115674.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135386.1Link to Ensembl Protein Viewer:ENSMUSP00000115674.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135386Re-query CCDS DB by Protein ID:ENSMUSP00000115674
Original member NCBI NM_001252472.1 NP_001239401.1 Updated not alive Link to Nucleotide Sequence:NM_001252472.1Link to Protein Sequence:NP_001239401.1Re-query CCDS DB by Nucleotide ID:NM_001252472Re-query CCDS DB by Protein ID:NP_001239401
Current member NCBI NM_001252472.2 NP_001239401.1 Accepted alive Link to Nucleotide Sequence:NM_001252472.2Link to Protein Sequence:NP_001239401.1Re-query CCDS DB by Nucleotide ID:NM_001252472Re-query CCDS DB by Protein ID:NP_001239401Link to BLAST:NP_001239401.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239401.1 140 Q18PI6-2 140 99.2857% 0 1

Chromosomal Locations for CCDS 56657.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171840658 171840703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171851803 171852179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGCCCAGCGCCATCTGTGGATCTGGTTCCTTTGCCTACAAACCTGGTCTGAAGCAGCAGGAAAAGATG
CAGACCCGGTGGTAATGAATGGGATTCTTGGGGAGTCAGTTACTTTCCTCTTAAATATTCAAGAACCAAA
GAAAATTGACAACATTGCCTGGACTTCTCAATCATCTGTTGCTTTTATAAAACCAGGAGTCAATAAAGCT
GAAGTTACCATAACCCAGGGCACTTATAAAGGACGAATAGAAATCATAGATCAGAAGTATGACCTGGTCA
TTAGAGACCTGAGGATGGAAGATGCAGGAACTTACAAAGCAGACATCAATGAAGAGAATGAGGAAACCAT
CACCAAGATCTACTACCTTCATATCTACCGTAAGTTATGGCAGCACGGGGCCTTGGATTTACTTTTGATT
TGA

Translation (140 aa):
MAQRHLWIWFLCLQTWSEAAGKDADPVVMNGILGESVTFLLNIQEPKKIDNIAWTSQSSVAFIKPGVNKA
EVTITQGTYKGRIEIIDQKYDLVIRDLRMEDAGTYKADINEENEETITKIYYLHIYRKLWQHGALDLLLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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