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Report for CCDS56847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56847.1 Public Mus musculus 12 Papln 23 108 98 CCDS HistoryNCBI Gene:170721Re-query CCDS DB by CCDS ID:56847.1Re-query CCDS DB by GeneID:170721See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121733.7 ENSMUSP00000113806.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121733.7Link to Ensembl Protein Viewer:ENSMUSP00000113806.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121733Re-query CCDS DB by Protein ID:ENSMUSP00000113806
Original member Current member NCBI NM_001205343.1 NP_001192272.1 Accepted alive Link to Nucleotide Sequence:NM_001205343.1Link to Protein Sequence:NP_001192272.1Re-query CCDS DB by Nucleotide ID:NM_001205343Re-query CCDS DB by Protein ID:NP_001192272Link to BLAST:NP_001192272.1

Chromosomal Locations for CCDS 56847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 83766158 83766214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83770415 83770530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83771819 83771879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83772122 83772224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83773108 83773238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83773824 83773947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83774402 83774482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83774569 83774741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83774846 83774969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83775343 83775469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83775849 83775914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83776354 83776561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83777020 83777202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83777354 83777495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83778483 83778563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83778724 83778985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83780142 83780262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83780550 83780688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83781821 83782295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83782881 83783018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83783270 83783394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83783653 83783806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83784264 83784401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83786555 83786682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83786769 83786877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83789155 83789321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83791832 83792007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3909 nt):
ATGCAGCTGTTCCCTCTCCTGTTCTCGCTGCTGCTGACCTCCACTCCAGGGTCTTGGGCTCGAAATGTGA
GGCGCCAGAGTGACACCTGGGGCACCTGGGGCGAATGGAGCCCCTGCAGCAGGACCTGTGGAGGAGGCAT
CAGCTTCCGGGAGCGCCCCTGCTACTCCCAGAGGAGAGACGGAGGCACCAGCTGCGTGGGCCCCGCGCGC
AGCCACCGCACCTGCCACACGGAGAGCTGCCCAGACGGCGTGCGGGACTTCCGGGCCGAGCAGTGTGCAG
AGTTCGACGGCACCGACTTCCAGGGTCGGCGCTACCGGTGGCTGCCCTACTACGCAGCCCCTAATAAGTG
TGAGCTGAACTGCATTCCCAAGGGGCAGAACTTCTACTACAAACACAAGGACGCCGTGGTGGATGGGACA
CCCTGTGAGCCTGGCCAGCGGGACATCTGTGTGGACGGAGTCTGCCGAGTGGTTGGCTGTGATCACAAGC
TAGACTCAATCAAGCAGGAGGACAAGTGTCTGCAGTGTGGGGGTGATGGCTCATCCTGCTACCCGGTCAC
AGGAACCTTTGATGGCAATGATCTCAGCAGAGGCTACAACCAAATCTTCATCATTCCGGCTGGGGCCACT
AGTATTCGCATTGAGGAAGCCGCTGCCAGCAGGAATTTCCTGGCCGTGAAGAGCATCCGTGGCGAGTACT
ATCTCAATGGGCACTGGACCATTGAGGCAGCCCAGGCTCTTCCGGTGGCCAGCACAGTCCTACAGTACGA
ACGGGGTGTGGAGGGGGACCTGGCTCCTGAGCGGCTCCAGGCACGGGGCCCCACCTCAGAGCCCCTGGTC
ATCGAGCTCCTCAGTCAGGAGTCCAACCCCGGAGTACACTACGAGTACTACCTGCCCGCGAATGATCCTG
GCCGAGGCTTCAGCTGGAGCCATGGCTCCTGGGGAGACTGCAGCGCTGAGTGTGGTGGAGGTCACCAGTC
CCGCCTGGTATTCTGCACTATTGACAACGAGGCCTATCCAGACCACATGTGCCAACACCAGCCTCGGCCC
ACCCACCGACGTTCATGCAACACTCAACCTTGTCCGAAGACCAAGCGGATCTCTTTCCTGCACCGGCCGG
GAGCGTGGCGCTATGCTGGGGTCCAGCATATGTGTGGGAACAGCTGGAAGGTAGGCCCATGGACGCCCTG
CTCGGTCTCCTGCGGGGGTGGAGTCCAGTCTCGCTCTGTCTACTGCATATCCTCAGATGGGACTGGTGGC
CAGGAAGCTGCTGAGGAGACCCAGTGTGCTGGCCTAGTTGGGAAACCCCCTACCACACAGGCTTGCAACC
TGCAGCACTGTGCAGTCTGGAGCGTGGAGCCCTGGGGAGAGTGCTCAGTTACATGCGGGACTGGCATCAG
GAAGAGGAGTGTCACCTGCCGAGGGGACGAGGGGTCTCCGGTCCATGCTGCAGCGTGCTTGTTGAAGGAC
CAGCCAACCCTCACGGAGCCCTGTGTACAAGAGGCCTGCCCTGTGTTCCGTGGCCAGGCCTGGCATGTTG
GCTCATGGAGTCTATGCTCTAAAAGCTGTGGTTCCGGCATTCGGAGAAGGCAGGTTGTTTGTACCATCGG
GCCGCCTGGTCGTTGTGTGGACCTGCAGTCGTCCAAGCCTGCCGAGATGGAAGCCTGCAACAGACAGCCC
TGCCATCTTCCTCAGGAGGTCCCTAGTATACAGGACCCAAGGACCCGCTCCTCAGACCCCAGGATGCTTT
CAGGCCCTCGAGTGTCCCCAGTCTCAGATGGAAGAGAGCAGCAGTGGGCTCCCCTCGAGAGACCCAGGGC
TCAGAGCAACCCCAGAGAGGGTCAAGACCCCAACCTGTCATCTGCAGGCCGGGCCCCAACTCTGCAGCGT
CCTCCACACCAGCCACCCCTGAGGCCTAGCTCAGGGCCCCGTGACTGCAGACACAGCCCCCATGGGTGCT
GCCCTGATGGCCACACACCATCTCTTGGGCCTCAGTGGCAAGGCTGTCCCCTGGCTGGGGCCTCATGTCT
TCAGAGCAGGTACGGATGCTGCCCCGACGGGGTGTCTGCAGCTGAGGGGCCCCAACAGGCTGGTTGTACC
AGGTCTCACGGCAGTGACAATACGGGAAACAGGCCAGGGTCCAGGGCAGTAGCTTCCAAGAACCCCAAGA
TCCACCAACCCCAGGCCCATGAAGGCGAGCCCAGTGAGTGTCGAAGCTCTAGGTTTGGATGTTGCTATGA
CAATGTGGCTTCTGCAGCGGGTCCGCTGGGGGAAGGCTGTGTGGGCCAGCCCAGCTATGCTTACCCAGTG
CGGTGTCTGCTGCCCAGTGCTCAAGGGTCATGTGGAGACTGGGCCGCCCGTTGGTACTTTGTGGCATCGG
TGGGCCGGTGTAACCGCTTTTGGTATGGCGGCTGTCATGGCAACGCCAATAACTTTGCATCGGAGCAGGA
GTGCATGAACACCTGCCGGGGACAGCATGGGCCCCGCCGTCCTGAGGCAGGAGCCGCTGGGCATCGTGCC
CATGTGGATGGTGGTCAACGTGGTCCTGGAGGCCAGCAGGAACCTGACTGGCACAGGGCAGGAGCCACAA
TCCCGAGACTGCCCTCCCCTTCTGGAAGCCCTTGGCGGAGAGAACAAGAGCCTGCGCCAGGGGAGCCACC
CCACATCCCAGCCTATGGAAACCGGCCTGGAGGCCAGGAAATCCGGCCCAGAGTTCCTGGACTGGACAGA
GAGGCTAGGCCAGCAGTGCCGCCTACACATAGCCCCTCCTACAGGATCCGATTGGCAGGCTCGGAACCCT
CCCTGGTACAGGCAGCTCCAGGGCAGGCGGTACAACTCTTTTGCCCTGGCAACATCCCCTCGGAATTCCA
GGCAGGGTGGCAGAAAGAGGGCCGGCCCATCTCCTCTAACAGGTACCAGCTCCAGGCAGATGGCTCCCTC
ATCATCAGCCGCTTGAGGCCGGAGGATGCTGGCATCTATAGCTGTGGCAGCCACAGGCCAGGCCATGAGC
CCCAGGAGATACAGCTTCGAGTCACAGGGGGTGACATGGCAGTGTTTCCTGAGGGCCAGCCGAGGCATTT
CCCTGAGCCCAGGAACCCAGACCTTGGCCATGGTCCTCCGCACCGTGGAACAGGAGCAGAAGCGGGGGGC
CACAGGGTCCTCTCTCCCTCACACCCCAGGCCTGCCACCAGGTTACGTCTGGACCGGACTCAGCCTGGAG
TGGTAGATGCCAGTCCTGGCCAGCGGATCCGGCTGACCTGCCGTGCTGAAGGCTTCCCGGTCCCTACCAT
CGAGTGGCAAAGAGATGGGCAGCTGGTCTCTTCTCCCAGGCACCAGGTGCAGCCTGATGGCTCTCTGGTC
ATCAGCCGAGTGGATGTGGAAGATGGGGGCTACTACAGCTGTGTTGCTTTTAATGGGCAGGACCGAGACC
AGCGCTGGGTCCAGCTCAGAGTTCTCAGGGAGCTGACAATCACAGGCCTGCCTCCTGCTGTGACCGTGGC
AGAGGGTGACACTGCCAGGCTTCTGTGTGTGGTGGCTGGAGAAAGTGTGAACATCCGGTGGTCCAGGAAT
GGCCTGCCAATACAGGCCGACGGTCACCGTGTGCACCAGTCCCCAGATGGCACACTGTTGATCCACAACT
TGCGGCCCAGGGACGAGGGCTCTTACACATGCAGTGCCTTCCGTGGGAGCCAGGCTGTGAGTCGCAGCAC
CGAGGTGAAGGTGGCCCTCCCAGCGCCAGCCGCACAGTCCAGGGACCTAGGCAAGGACTGCATCGACCAG
CCGGAGCTGGCCAACTGTGCGTTGATCCTGCAGGCCCAGCTCTGTGGCAATGAATATTACTCCAGCTTCT
GCTGTGCCAGCTGCTCCCGCTTCCAGCCAAATGCCCAGCCTGTGTGGCAGCAGGGATGA

Translation (1302 aa):
MQLFPLLFSLLLTSTPGSWARNVRRQSDTWGTWGEWSPCSRTCGGGISFRERPCYSQRRDGGTSCVGPAR
SHRTCHTESCPDGVRDFRAEQCAEFDGTDFQGRRYRWLPYYAAPNKCELNCIPKGQNFYYKHKDAVVDGT
PCEPGQRDICVDGVCRVVGCDHKLDSIKQEDKCLQCGGDGSSCYPVTGTFDGNDLSRGYNQIFIIPAGAT
SIRIEEAAASRNFLAVKSIRGEYYLNGHWTIEAAQALPVASTVLQYERGVEGDLAPERLQARGPTSEPLV
IELLSQESNPGVHYEYYLPANDPGRGFSWSHGSWGDCSAECGGGHQSRLVFCTIDNEAYPDHMCQHQPRP
THRRSCNTQPCPKTKRISFLHRPGAWRYAGVQHMCGNSWKVGPWTPCSVSCGGGVQSRSVYCISSDGTGG
QEAAEETQCAGLVGKPPTTQACNLQHCAVWSVEPWGECSVTCGTGIRKRSVTCRGDEGSPVHAAACLLKD
QPTLTEPCVQEACPVFRGQAWHVGSWSLCSKSCGSGIRRRQVVCTIGPPGRCVDLQSSKPAEMEACNRQP
CHLPQEVPSIQDPRTRSSDPRMLSGPRVSPVSDGREQQWAPLERPRAQSNPREGQDPNLSSAGRAPTLQR
PPHQPPLRPSSGPRDCRHSPHGCCPDGHTPSLGPQWQGCPLAGASCLQSRYGCCPDGVSAAEGPQQAGCT
RSHGSDNTGNRPGSRAVASKNPKIHQPQAHEGEPSECRSSRFGCCYDNVASAAGPLGEGCVGQPSYAYPV
RCLLPSAQGSCGDWAARWYFVASVGRCNRFWYGGCHGNANNFASEQECMNTCRGQHGPRRPEAGAAGHRA
HVDGGQRGPGGQQEPDWHRAGATIPRLPSPSGSPWRREQEPAPGEPPHIPAYGNRPGGQEIRPRVPGLDR
EARPAVPPTHSPSYRIRLAGSEPSLVQAAPGQAVQLFCPGNIPSEFQAGWQKEGRPISSNRYQLQADGSL
IISRLRPEDAGIYSCGSHRPGHEPQEIQLRVTGGDMAVFPEGQPRHFPEPRNPDLGHGPPHRGTGAEAGG
HRVLSPSHPRPATRLRLDRTQPGVVDASPGQRIRLTCRAEGFPVPTIEWQRDGQLVSSPRHQVQPDGSLV
ISRVDVEDGGYYSCVAFNGQDRDQRWVQLRVLRELTITGLPPAVTVAEGDTARLLCVVAGESVNIRWSRN
GLPIQADGHRVHQSPDGTLLIHNLRPRDEGSYTCSAFRGSQAVSRSTEVKVALPAPAAQSRDLGKDCIDQ
PELANCALILQAQLCGNEYYSSFCCASCSRFQPNAQPVWQQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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