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Report for CCDS56860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56860.1 Under review, update Mus musculus 12 Serpina11 23 108 98 CCDS HistoryNCBI Gene:380780Re-query CCDS DB by CCDS ID:56860.1Re-query CCDS DB by GeneID:380780See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 56860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120251.8 ENSMUSP00000112420.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120251.8Link to Ensembl Protein Viewer:ENSMUSP00000112420.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000120251Re-query CCDS DB by Protein ID:ENSMUSP00000112420
Original member NCBI NM_001166350.1 NP_001159822.1 Updated not alive Link to Nucleotide Sequence:NM_001166350.1Link to Protein Sequence:NP_001159822.1Re-query CCDS DB by Nucleotide ID:NM_001166350Re-query CCDS DB by Protein ID:NP_001159822
Current member NCBI NM_001166350.2 NP_001159822.2 Pending alive Link to Nucleotide Sequence:NM_001166350.2Link to Protein Sequence:NP_001159822.2Re-query CCDS DB by Nucleotide ID:NM_001166350Re-query CCDS DB by Protein ID:NP_001159822Link to BLAST:NP_001159822.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159822.2 424 Q8CIE0 424 99.5283% 0 2

Chromosomal Locations for CCDS 56860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103980357 103980560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103982837 103982984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103984535 103984808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103985858 103986509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGATGGGGCCAGTGTGGCTGTGGCTGTGGCTGCTGGTAGCCGAGGTCCTGCTTCCTGTCCATTGTCAGC
CATTTTCTGCCCATGGAGATAAGAGTCTGGGGGCATCTCAACCAGCCAGTCACCAGTCCCTGGAGCCAGC
ACCCGCCTATCACAAGGTCACACCCACCATTACGAATTTTGCTTTGCGTCTATACAAGCAACTAGCAGAG
GAAGTAGCGGGAAACATCCTTTTCTCCCCTGTGAGCCTCTCCAGCAGCCTGGCTCTGCTGTCTCTTGGGG
CACATGCTGACACCCAGACTCAAATTCTGGAGAGCCTGGGCTTCAACCTCACAGAGACCCCAGCAGCTGA
CGTCCACCGGGGTTTCCAGAGCCTCCTGCACACTCTTGACCTCCCCAGCCCCAAACTGGAACTGAAACTG
GGACATTTCCTGTTCCTAGACAGACAGCTGAAGCCTCAGCAACGTTTTCTGGACAGTGCCAAGGAACTGT
ATGGAGCTCTGGCCTTTTCTGCCAACTTCACAGAAGCAGCTGCCACAGGGCAGCAGATCAATGACCTAGT
GAGGAAGCAGACCTACGGGCAGGTGGTGGGCTGTCTCCCGGAGTTCAGCCATGACACTCTCATGGTTCTC
TTGAACTACATCTTCTTCAAAGCCAAGTGCAAGCATCCCTTTGATCGCTACCAGACCCGGAAGCAGGAGA
GCTTCTCCCTGGACCAGAGGACGCCACTCCGAATTCCCATGATGCGACAGAAGGAAATGCACAGGTTCCT
GTACGACCAGGAGGCGTCGTGCACTGTCCTCCAGATCGAGTACAGTGGCACCGCCTTGCTGCTGCTGGTC
CTCCCTGACCCTGGGAAGATGCAGCAGGTAGAGGCTGCCCTCCAGCCAGAGACGCTGAGAAGGTGGGGCC
AGCGGTTCCTGCCCAGTCTGTTGGATTTGCACCTGCCAAGGTTTTCAATTTCCGCAACTTACAACCTGGA
AGAGATCCTGCCCCTCATTGGTCTTGGCAACCTATTCGACATGGAAGCTGACTTATCAGGAATTATGGGG
CAACTCAACAAAACTGTCTCCAGGGTGTCACACAAGGCCATCGTGGACATGAACGAGAAGGGAACTGAGG
CTGCAGCTGCCTCTGGCCTCCTGTCCCAGCCCCCAGCCCTGAACATGACATCAGCCCCACAGGCCCACTA
TAACAGGCCCTTCCTGCTTCTGCTCTGGGAGGTGACCACCCAGAGTCTGCTCTTCTTGGGGAAAGTGGTC
AACCCAGCTGCTGGGTAA

Translation (425 aa):
MMGPVWLWLWLLVAEVLLPVHCQPFSAHGDKSLGASQPASHQSLEPAPAYHKVTPTITNFALRLYKQLAE
EVAGNILFSPVSLSSSLALLSLGAHADTQTQILESLGFNLTETPAADVHRGFQSLLHTLDLPSPKLELKL
GHFLFLDRQLKPQQRFLDSAKELYGALAFSANFTEAAATGQQINDLVRKQTYGQVVGCLPEFSHDTLMVL
LNYIFFKAKCKHPFDRYQTRKQESFSLDQRTPLRIPMMRQKEMHRFLYDQEASCTVLQIEYSGTALLLLV
LPDPGKMQQVEAALQPETLRRWGQRFLPSLLDLHLPRFSISATYNLEEILPLIGLGNLFDMEADLSGIMG
QLNKTVSRVSHKAIVDMNEKGTEAAAASGLLSQPPALNMTSAPQAHYNRPFLLLLWEVTTQSLLFLGKVV
NPAAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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