NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5687.1 Public Homo sapiens 7 TRAPPC14 24 110 108 CCDS HistoryNCBI Gene:55262Re-query CCDS DB by CCDS ID:5687.1Re-query CCDS DB by GeneID:55262See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5687.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316937.8 ENSP00000324741.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316937.8Link to Ensembl Protein Viewer:ENSP00000324741.3Re-query CCDS DB by Nucleotide ID:ENST00000316937Re-query CCDS DB by Protein ID:ENSP00000324741
Original member Current member NCBI NM_018275.5 NP_060745.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018275.5Link to Protein Sequence:NP_060745.3Re-query CCDS DB by Nucleotide ID:NM_018275Re-query CCDS DB by Protein ID:NP_060745Link to BLAST:NP_060745.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060745.3 580 Q8WVR3-1 580 100% 0 0

Chromosomal Locations for CCDS 5687.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100155011 100155164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100155262 100155455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100155671 100155825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100156386 100156549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100156634 100156716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100156845 100156992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100157094 100157214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100157373 100157459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100157633 100157762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100157843 100157938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100158089 100158499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGGAGTCCCAGTGCGACTACTCGATGTACTTCCCGGCCGTGCCGCTGCCGCCGCGCGCGGAGCTGGCAG
GGGATCCGGGCCGGTACCGGGCGCTGCCCCGGCGCAACCATCTGTACTTGGGGGAGACTGTCCGTTTTCT
GCTGGTGTTGCGCTGCCGGGGCGGTGCGGGGTCCGGCACCGGGGGCGGCCCGGGCTTGGGCTCCAGAGGA
GCCTGGGCAGAACTGGCAACCGCCCTGGCCGCCCTGGCCTCGGTCAGCGCCGGAGGCGGGATGCCGGGGG
GCGGCGGCGCCGGCGACCAGGATTCGGAGCCCCCAGGGGGAGGGGATCCTGGGGGTGGGGGTTTGTTCCG
AGGCTGCAGCCCCCTTCTCACCCACGGCCCGGGCCCTGCTACCTCAGGGGGAGCGACCACGCTGCCTGTG
GAGGAACCGATTGTGTCCACAGATGAGGTCATCTTCCCACTCACCGTTTCACTGGATAGACTGCCCCCAG
GGACACCTAAGGCCAAGATTGTAGTGACTGTGTGGAAGCGGGAGATTGAGGCACCAGAGGTCAGAGATCA
AGGCTACCTGCGATTGCTGCAGACCCGATCTCCTGGGGAGACATTCCGGGGCGAGCAGAGCGCTTTCAAG
GCCCAAGTGAGCACGCTGCTGACTCTGCTGCCCCCTCCGGTTCTGAGATGCCGGCAGTTCACTGTGGCTG
GAAAACACTTGACCGTGCTCAAGGTGCTGAACAGCTCCTCTCAGGAGGAAATCTCCATCTGGGATATCCG
AATCCTCCCCAACTTCAACGCCAGTTATCTACCTGTCATGCCCGATGGCTCTGTGCTGCTGGTGGACAAT
GTCTGTCACCAGTCTGGGGAAGTCTCCATGGGCTCCTTCTGCCGCCTACCCGGGACCTCTGGCTGCTTCC
CCTGCCCGCTGAATGCCCTGGAGGAACACAACTTCCTGTTTCAGCTGAGAGGGGGTGAGCAGCCCCCTCC
AGGGGCCAAGGAGGGCCTGGAAGTTCCCCTGATTGCTGTGGTTCAGTGGTCTACCCCAAAGCTGCCCTTC
ACTCAGAGCATCTACACCCACTACCGCCTGCCCAGTGTCCGCTTGGACCGCCCGTGTTTTGTGATGACCG
CTTCTTGTAAGTCCCCTGTTCGGACCTACGAGCGTTTCACTGTCACCTACACGCTGCTTAACAATCTCCA
AGACTTCCTTGCTGTGAGGCTCGTGTGGACCCCAGAGCATGCACAGGCTGGAAAGCAGCTGTGTGAGGAG
GAGCGCCGGGCCATGCAGGCTGCCCTGGACTCCGTCGTCTGCCACACGCCCCTCAACAACCTTGGCTTTT
CCCGGAAGGGCAGCGCGCTCACCTTCAGTGTGGCCTTCCAGGCTCTGAGGACGGGGCTCTTCGAGCTAAG
CCAGCACATGAAACTGAAGCTGCAGTTCACCGCCAGCGTGTCCCACCCTCCACCCGAGGCCCGGCCCCTC
TCCCGCAAGAGCAGCCCCAGCAGCCCTGCTGTCCGGGACTTGGTGGAGAGGCATCAGGCTAGCCTGGGCC
GCTCCCAGTCCTTCTCCCACCAGCAGCCTTCCCGAAGCCACCTCATGAGGTCGGGCAGTGTGATGGAGCG
CAGAGCCATCACGCCCCCTGTGGCCTCTCCTGTTGGCCGCCCCCTCTACCTGCCCCCGGACAAGGCTGTG
TTGTCTCTGGACAAGATTGCCAAGCGCGAGTGCAAGGTCCTGGTGGTGGAACCCGTCAAGTAG

Translation (580 aa):
MESQCDYSMYFPAVPLPPRAELAGDPGRYRALPRRNHLYLGETVRFLLVLRCRGGAGSGTGGGPGLGSRG
AWAELATALAALASVSAGGGMPGGGGAGDQDSEPPGGGDPGGGGLFRGCSPLLTHGPGPATSGGATTLPV
EEPIVSTDEVIFPLTVSLDRLPPGTPKAKIVVTVWKREIEAPEVRDQGYLRLLQTRSPGETFRGEQSAFK
AQVSTLLTLLPPPVLRCRQFTVAGKHLTVLKVLNSSSQEEISIWDIRILPNFNASYLPVMPDGSVLLVDN
VCHQSGEVSMGSFCRLPGTSGCFPCPLNALEEHNFLFQLRGGEQPPPGAKEGLEVPLIAVVQWSTPKLPF
TQSIYTHYRLPSVRLDRPCFVMTASCKSPVRTYERFTVTYTLLNNLQDFLAVRLVWTPEHAQAGKQLCEE
ERRAMQAALDSVVCHTPLNNLGFSRKGSALTFSVAFQALRTGLFELSQHMKLKLQFTASVSHPPPEARPL
SRKSSPSSPAVRDLVERHQASLGRSQSFSHQQPSRSHLMRSGSVMERRAITPPVASPVGRPLYLPPDKAV
LSLDKIAKRECKVLVVEPVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH