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Report for CCDS5700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5700.1 Public Homo sapiens 7 PCOLCE 24 110 108 CCDS HistoryNCBI Gene:5118Re-query CCDS DB by CCDS ID:5700.1Re-query CCDS DB by GeneID:5118See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000223061.6 ENSP00000223061.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000223061.6Link to Ensembl Protein Viewer:ENSP00000223061.5Re-query CCDS DB by Nucleotide ID:ENST00000223061Re-query CCDS DB by Protein ID:ENSP00000223061
Original member Current member NCBI NM_002593.4 NP_002584.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002593.4Link to Protein Sequence:NP_002584.2Re-query CCDS DB by Nucleotide ID:NM_002593Re-query CCDS DB by Protein ID:NP_002584Link to BLAST:NP_002584.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002584.2 449 Q15113 449 100% 0 0

Chromosomal Locations for CCDS 5700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100602457 100602551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100603430 100603538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100603959 100604217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100605091 100605215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100605676 100605812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100606416 100606630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100607452 100607523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100607637 100607807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100607937 100608103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGCTGCCTGCAGCCACAGCCTCCCTCCTGGGGCCCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGCCC
AGGGCCAGACCCCCAACTACACCAGACCCGTGTTCCTGTGCGGAGGGGATGTGAAGGGGGAATCAGGTTA
CGTGGCAAGTGAGGGGTTCCCCAACCTCTACCCCCCTAATAAGGAGTGCATCTGGACCATAACGGTCCCC
GAGGGCCAGACTGTGTCCCTCTCATTCCGAGTCTTCGACCTGGAGCTGCACCCCGCCTGCCGCTACGATG
CTCTGGAGGTCTTCGCTGGGTCTGGGACTTCCGGCCAGCGGCTCGGACGCTTTTGTGGGACCTTCCGGCC
TGCGCCCCTAGTCGCCCCCGGCAACCAGGTGACCCTGAGGATGACGACGGATGAGGGCACAGGAGGACGA
GGCTTCCTGCTCTGGTACAGCGGGCGGGCCACCTCGGGCACTGAGCACCAATTTTGCGGGGGGCGGCTGG
AGAAGGCCCAGGGAACCCTGACCACGCCCAACTGGCCCGAGTCCGATTACCCCCCGGGCATCAGCTGTTC
CTGGCACATCATCGCGCCCCCGGACCAGGTCATCGCGCTGACCTTCGAGAAGTTTGACCTGGAGCCGGAC
ACCTACTGCCGCTATGACTCGGTCAGCGTGTTCAACGGAGCCGTGAGCGACGACTCCCGGAGGCTGGGGA
AGTTCTGCGGCGACGCAGTCCCGGGCTCCATCTCCTCCGAAGGGAATGAACTCCTCGTCCAGTTCGTCTC
AGATCTCAGTGTCACCGCTGATGGCTTCTCAGCCTCCTACAAGACCCTGCCGCGGGGCACTGCCAAAGAA
GGGCAAGGGCCCGGCCCCAAACGGGGAACTGAGCCTAAAGTCAAGCTGCCCCCCAAGTCCCAACCTCCGG
AGAAAACAGAGGAATCTCCTTCAGCCCCTGATGCACCCACCTGCCCAAAGCAGTGCCGCCGGACAGGCAC
CTTGCAGAGCAACTTCTGTGCCAGCAGCCTTGTGGTGACTGCGACAGTGAAGTCCATGGTTCGGGAGCCA
GGGGAGGGCCTTGCCGTGACTGTCAGTCTTATTGGTGCTTATAAAACTGGAGGACTGGACCTGCCTTCTC
CACCCACTGGTGCCTCCCTGAAGTTTTACGTGCCTTGCAAGCAGTGCCCCCCCATGAAGAAAGGAGTCAG
TTATCTGCTGATGGGCCAGGTAGAAGAGAACAGAGGCCCCGTCCTTCCTCCAGAGAGCTTTGTGGTTCTC
CACCGGCCCAACCAGGACCAGATCCTCACCAACCTAAGCAAGAGGAAGTGCCCCTCTCAACCTGTGCGGG
CTGCTGCGTCCCAGGACTGA

Translation (449 aa):
MLPAATASLLGPLLTACALLPFAQGQTPNYTRPVFLCGGDVKGESGYVASEGFPNLYPPNKECIWTITVP
EGQTVSLSFRVFDLELHPACRYDALEVFAGSGTSGQRLGRFCGTFRPAPLVAPGNQVTLRMTTDEGTGGR
GFLLWYSGRATSGTEHQFCGGRLEKAQGTLTTPNWPESDYPPGISCSWHIIAPPDQVIALTFEKFDLEPD
TYCRYDSVSVFNGAVSDDSRRLGKFCGDAVPGSISSEGNELLVQFVSDLSVTADGFSASYKTLPRGTAKE
GQGPGPKRGTEPKVKLPPKSQPPEKTEESPSAPDAPTCPKQCRRTGTLQSNFCASSLVVTATVKSMVREP
GEGLAVTVSLIGAYKTGGLDLPSPPTGASLKFYVPCKQCPPMKKGVSYLLMGQVEENRGPVLPPESFVVL
HRPNQDQILTNLSKRKCPSQPVRAAASQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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