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Report for CCDS57103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57103.1 Public Mus musculus 17 Ptprs 23 108 98 CCDS HistoryNCBI Gene:19280Re-query CCDS DB by CCDS ID:57103.1Re-query CCDS DB by GeneID:19280See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57103.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086828.9 ENSMUSP00000084038.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086828.9Link to Ensembl Protein Viewer:ENSMUSP00000084038.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000086828Re-query CCDS DB by Protein ID:ENSMUSP00000084038
Original member NCBI NM_001252453.1 NP_001239382.1 Updated not alive Link to Nucleotide Sequence:NM_001252453.1Link to Protein Sequence:NP_001239382.1Re-query CCDS DB by Nucleotide ID:NM_001252453Re-query CCDS DB by Protein ID:NP_001239382
Current member NCBI NM_001252453.2 NP_001239382.1 Accepted alive Link to Nucleotide Sequence:NM_001252453.2Link to Protein Sequence:NP_001239382.1Re-query CCDS DB by Nucleotide ID:NM_001252453Re-query CCDS DB by Protein ID:NP_001239382Link to BLAST:NP_001239382.1
Original member NCBI NM_001252456.1 NP_001239385.1 Updated not alive Link to Nucleotide Sequence:NM_001252456.1Link to Protein Sequence:NP_001239385.1Re-query CCDS DB by Nucleotide ID:NM_001252456Re-query CCDS DB by Protein ID:NP_001239385
Current member NCBI NM_001252456.2 NP_001239385.1 Accepted alive Link to Nucleotide Sequence:NM_001252456.2Link to Protein Sequence:NP_001239385.1Re-query CCDS DB by Nucleotide ID:NM_001252456Re-query CCDS DB by Protein ID:NP_001239385Link to BLAST:NP_001239385.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239382.1 1501 B0V2N1-3 1501 100% 0 0
NP_001239385.1 1501 B0V2N1-3 1501 100% 0 0

Chromosomal Locations for CCDS 57103.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56413325 56413393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56413729 56413864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56413951 56414105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56414683 56414808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56414885 56415011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56416881 56417059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56417226 56417511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56417591 56417745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56418711 56418830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56418910 56419085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56419404 56419527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56419623 56419720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56421240 56421352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56421833 56421844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56422129 56422286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56423183 56423398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56423494 56423587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56424025 56424278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56424880 56424977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56434453 56434597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56434881 56435014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56435610 56436191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56437786 56438055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56447360 56447470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56451652 56451840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56454187 56454328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56454874 56455019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56458192 56458282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4506 nt):
ATGGCGCCCACCTGGAGTCCCAGCGTGGTGTCTGTGGTGGGTCCTGTGGGGCTCTTCCTCGTACTGCTGG
CCAGAGGATGCTTGGCTGAAGAACCACCCAGGTTTATCAGAGAGCCCAAGGATCAGATTGGAGTGTCGGG
AGGCGTGGCCTCCTTCGTGTGCCAGGCCACGGGTGATCCTAAGCCACGGGTGACCTGGAACAAGAAGGGC
AAGAAAGTGAACTCACAGCGCTTCGAGACCATTGACTTTGACGAGAGCTCTGGGGCGGTCCTGAGGATCC
AGCCACTTCGGACGCCTCGGGATGAGAACGTGTACGAGTGTGTGGCCCAGAACTCGGTGGGCGAAATCAC
AATTCATGCAAAGCTCACCGTCCTTCGAGAGGACCAGCTGCCTCCTGGCTTCCCCAACATTGACATGGGC
CCCCAGTTGAAGGTTGTAGAGCGCACACGCACAGCCACCATGCTCTGTGCTGCCAGCGGGAACCCGGACC
CTGAGATCACCTGGTTTAAGGACTTCCTGCCTGTGGACCCCAGTGCCAGCAACGGGCGGATCAAGCAGCT
TCGATCAGGTGCCCTGCAGATTGAGAGCAGCGAGGAGACAGACCAGGGCAAGTACGAGTGTGTGGCCACC
AACAGCGCTGGGGTGCGCTACTCATCACCTGCCAACCTCTACGTGCGAGTCCGCCGTGTGGCCCCACGCT
TCTCCATCCTGCCCATGAGCCACGAGATCATGCCCGGTGGGAATGTGAATATCACTTGTGTGGCCGTGGG
CTCACCCATGCCCTACGTGAAATGGATGCAGGGGGCCGAGGACCTGACGCCTGAGGATGACATGCCCGTG
GGTCGGAATGTTCTAGAACTCACGGATGTCAAGGACTCAGCTAACTACACTTGTGTGGCCATGTCCAGCC
TGGGTGTGATCGAGGCCGTGGCCCAGATCACTGTAAAATCTCTCCCCAAAGCCCCTGGGACTCCTGTGGT
GACGGAGAACACTGCCACCAGTATCACTGTCACATGGGACTCGGGCAACCCTGACCCCGTGTCCTACTAC
GTAATTGAGTATAAGTCCAAAAGCCAGGATGGGCCGTATCAGATCAAAGAAGACATCACCACCACGCGCT
ACAGCATCGGAGGCCTGAGCCCCAATTCTGAGTATGAGATCTGGGTGTCAGCTGTCAACTCCATTGGCCA
GGGCCCTCCCAGTGAATCGGTGGTGACCCGCACAGGTGAGCAGGCACCAGCCAGCGCTCCCAGGAATGTT
CAGGCCCGCATGCTCAGCGCCACCACCATGATCGTGCAGTGGGAGGAGCCTGTGGAGCCCAATGGCCTGA
TCCGTGGCTACCGTGTCTACTATACCATGGAGCCGGAACACCCAGTGGGCAACTGGCAGAAACACAATGT
GGACGACAGTCTCCTGACCACTGTGGGCAGCCTGCTGGAAGACGAGACCTACACCGTGCGCGTGCTCGCC
TTCACGTCGGTGGGCGACGGACCACTGTCAGACCCCATCCAGGTCAAGACCCAGCAGGGAGTTCCTGGCC
AGCCCATGAACTTGCGGGCTGAGGCCAAGTCAGAGACCAGCATTGGGCTCTCGTGGAGTGCACCACGACA
GGAGAGTGTCATTAAGTATGAACTGCTCTTCCGGGAGGGCGACCGAGGCCGAGAGGTGGGGCGAACCTTC
GACCCAACCACAGCCTTTGTGGTGGAGGACCTCAAGCCCAATACGGAGTATGCGTTCCGGCTGGCGGCGC
GCTCGCCGCAGGGCCTGGGCGCCTTCACCGCGGTCGTGCGCCAGCGCACGCTGCAGGCCATCTCCCCAAA
GAACTTCAAGGTGAAGATGATCATGAAGACTTCAGTGCTGCTGAGCTGGGAGTTCCCCGACAACTATAAC
TCACCCACACCCTACAAGATTCAGTACAATGGGCTCACCCTGGATGTGGACGGCCGCACGACCAAGAAGC
TGATCACACACCTCAAGCCACACACCTTCTATAATTTCGTGCTCACCAACCGTGGCAGCAGCCTGGGGGG
CCTGCAGCAGACGGTCACTGCCAGGACCGCCTTTAACATGCTCAGTGGCAAGCCTAGCGTCGCCCCGAAG
CCCGACAATGACGGTTTCATCGTGGTCTACCTGCCTGATGGCCAGAGTCCTGTGACCGTGCAGAACTACT
TCATTGTGATGGTCCCACTTCGGAAGTCTCGAGGTGGCCAGTTCCCTGTCCTACTAGGTAGTCCAGAGGA
CATGGATCTGGAGGAGCTCATCCAGGACATCTCCCGGCTGCAGAGGCGCAGCCTGCGCCACTCCAGACAG
CTGGAGGTGCCTCGGCCCTACATCGCCGCTCGATTCTCCATCCTGCCAGCTGTCTTCCATCCTGGGAACC
AGAAGCAATATGGTGGCTTTGACAACAGGGGCTTGGAGCCAGGCCACCGCTATGTCCTCTTTGTGCTTGC
TGTGTTGCAGAAGAATGAGCCTACATTTGCAGCCAGTCCCTTCTCAGACCCCTTCCAGCTGGACAACCCG
GACCCTCAGCCCATTGTGGACGGCGAGGAGGGCCTCATCTGGGTGATTGGGCCTGTGCTGGCCGTGGTCT
TCATCATCTGCATCGTGATTGCCATCCTGCTGTACAAGAACAAACCTGACAGCAAACGCAAGGACTCAGA
GCCCCGCACCAAATGCTTACTGAACAATGCCGACCTTGCCCCCCATCACCCCAAGGACCCTGTGGAAATG
CGACGCATCAACTTCCAGACACCAGGTATGCTCAGCCACCCACCCATCCCCATCACAGACATGGCGGAGC
ACATGGAGAGACTCAAAGCCAACGACAGCCTGAAGCTCTCCCAGGAGTACGAGTCCATTGACCCCGGGCA
GCAATTCACGTGGGAACATTCGAACCTGGAGGCCAACAAGCCCAAGAACCGCTATGCCAACGTCATCGCC
TATGACCACTCACGAGTCATCCTGCAGCCCCTAGAAGGCATCATGGGTAGTGATTACATCAATGCCAACT
ATGTGGACGGCTACCGGCGGCAGAATGCATACATTGCCACGCAGGGGCCCCTGCCTGAGACCTTTGGGGA
CTTCTGGCGGATGGTGTGGGAGCAGCGATCGGCCACTGTGGTCATGATGACGCGACTGGAGGAGAAATCA
CGGATCAAATGTGACCAATACTGGCCTAACCGAGGCACCGAGACATACGGCTTCATCCAGGTCACCCTAC
TAGATACCATGGAGCTGGCTACCTTCTGCGTCAGGACTTTTTCTCTACACAAGAATGGCTCTAGCGAGAA
GCGTGAGGTGCGACATTTCCAGTTCACGGCATGGCCCGACCACGGGGTACCTGAGTACCCCACGCCCTTC
CTGGCATTCCTGCGAAGAGTCAAGACCTGCAACCCGCCTGATGCTGGCCCCATTGTGGTCCACTGCAGCG
CGGGTGTGGGGCGCACTGGCTGCTTCATCGTAATTGACGCCATGCTAGAGCGCATCAAGACAGAGAAGAC
CGTGGATGTGTATGGACATGTGACACTCATGCGGTCGCAGCGCAACTACATGGTGCAGACAGAGGATCAG
TATGGCTTCATCCACGAGGCGCTGCTGGAGGCTGTGGGCTGCGGCAATACCGAGGTCCCTGCTCGCAGCC
TCTACACCTACATCCAGAAGCTGGCCCAGGTGGAGCCTGGCGAGCACGTCACGGGCATGGAGCTTGAGTT
CAAGAGGCTCGCCAGTTCCAAGGCACACACTTCGCGCTTCATCACCGCCAGCCTGCCTTGCAACAAGTTT
AAGAACCGACTGGTGAACATCCTGCCGTACGAGAGCTCGCGTGTCTGCCTGCAGCCCATCCGCGGTGTGG
AGGGCTCTGACTACATCAATGCCAGCTTTATCGACGGCTATAGACAGCAGAAAGCCTACATTGCAACACA
GGGGCCACTGGCAGAGACCACAGAGGACTTCTGGCGAGCTCTGTGGGAGAACAACTCTACTATTGTCGTA
ATGCTCACCAAGCTCCGAGAAATGGGCCGGGAAAAGTGCCACCAGTACTGGCCAGCCGAGCGCTCTGCCC
GCTACCAGTACTTTGTGGTTGACCCGATGGCAGAGTATAACATGCCACAGTACATTCTGCGTGAGTTTAA
GGTCACAGATGCCCGGGATGGCCAGTCCCGGACCGTCCGACAGTTCCAGTTCACGGACTGGCCAGAGCAG
GGTGCACCCAAGTCAGGGGAAGGCTTCATTGACTTCATCGGCCAAGTGCATAAGACCAAGGAGCAGTTTG
GCCAGGACGGACCCATCTCAGTGCACTGCAGCGCCGGAGTGGGCAGGACCGGAGTGTTCATCACCCTGAG
CATCGTGCTTGAGCGGATGCGCTACGAGGGCGTGGTGGACATTTTCCAGACAGTGAAGGTGCTTCGGACC
CAGAGGCCTGCCATGGTGCAGACAGAGGACGAGTACCAGTTCTGCTTCCAGGCGGCTTTGGAATACCTGG
GCAGTTTTGATCATTATGCAACATAA

Translation (1501 aa):
MAPTWSPSVVSVVGPVGLFLVLLARGCLAEEPPRFIREPKDQIGVSGGVASFVCQATGDPKPRVTWNKKG
KKVNSQRFETIDFDESSGAVLRIQPLRTPRDENVYECVAQNSVGEITIHAKLTVLREDQLPPGFPNIDMG
PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT
NSAGVRYSSPANLYVRVRRVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV
GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAPGTPVVTENTATSITVTWDSGNPDPVSYY
VIEYKSKSQDGPYQIKEDITTTRYSIGGLSPNSEYEIWVSAVNSIGQGPPSESVVTRTGEQAPASAPRNV
QARMLSATTMIVQWEEPVEPNGLIRGYRVYYTMEPEHPVGNWQKHNVDDSLLTTVGSLLEDETYTVRVLA
FTSVGDGPLSDPIQVKTQQGVPGQPMNLRAEAKSETSIGLSWSAPRQESVIKYELLFREGDRGREVGRTF
DPTTAFVVEDLKPNTEYAFRLAARSPQGLGAFTAVVRQRTLQAISPKNFKVKMIMKTSVLLSWEFPDNYN
SPTPYKIQYNGLTLDVDGRTTKKLITHLKPHTFYNFVLTNRGSSLGGLQQTVTARTAFNMLSGKPSVAPK
PDNDGFIVVYLPDGQSPVTVQNYFIVMVPLRKSRGGQFPVLLGSPEDMDLEELIQDISRLQRRSLRHSRQ
LEVPRPYIAARFSILPAVFHPGNQKQYGGFDNRGLEPGHRYVLFVLAVLQKNEPTFAASPFSDPFQLDNP
DPQPIVDGEEGLIWVIGPVLAVVFIICIVIAILLYKNKPDSKRKDSEPRTKCLLNNADLAPHHPKDPVEM
RRINFQTPGMLSHPPIPITDMAEHMERLKANDSLKLSQEYESIDPGQQFTWEHSNLEANKPKNRYANVIA
YDHSRVILQPLEGIMGSDYINANYVDGYRRQNAYIATQGPLPETFGDFWRMVWEQRSATVVMMTRLEEKS
RIKCDQYWPNRGTETYGFIQVTLLDTMELATFCVRTFSLHKNGSSEKREVRHFQFTAWPDHGVPEYPTPF
LAFLRRVKTCNPPDAGPIVVHCSAGVGRTGCFIVIDAMLERIKTEKTVDVYGHVTLMRSQRNYMVQTEDQ
YGFIHEALLEAVGCGNTEVPARSLYTYIQKLAQVEPGEHVTGMELEFKRLASSKAHTSRFITASLPCNKF
KNRLVNILPYESSRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRALWENNSTIVV
MLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQ
GAPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKVLRT
QRPAMVQTEDEYQFCFQAALEYLGSFDHYAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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