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Report for CCDS57120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57120.1 Public Mus musculus 18 Pcdhb20 23 108 98 CCDS HistoryNCBI Gene:93891Re-query CCDS DB by CCDS ID:57120.1Re-query CCDS DB by GeneID:93891See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57120.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052179.7 ENSMUSP00000137038.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052179.7Link to Ensembl Protein Viewer:ENSMUSP00000137038.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000052179Re-query CCDS DB by Protein ID:ENSMUSP00000137038
Original member NCBI NM_053145.2 NP_444375.2 Updated not alive Link to Nucleotide Sequence:NM_053145.2Link to Protein Sequence:NP_444375.2Re-query CCDS DB by Nucleotide ID:NM_053145Re-query CCDS DB by Protein ID:NP_444375
Current member NCBI NM_053145.3 NP_444375.2 Accepted alive Link to Nucleotide Sequence:NM_053145.3Link to Protein Sequence:NP_444375.2Re-query CCDS DB by Nucleotide ID:NM_053145Re-query CCDS DB by Protein ID:NP_444375Link to BLAST:NP_444375.2

Chromosomal Locations for CCDS 57120.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37504423 37506822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGGGAAGGAGAAGGGCTCTCATCCTGCAGAAAAGGCAAGTCTTGGTTTTCTTTGTTTTCCTGGGATTGT
CTCAGGCGAGTGCTGAATCTTTGCGCTATTCTGTAGCAGAGGAAACAGAAATTGGCTCTTTTGTGGCTAA
TCTGGCAAAGGATTTAGGACTGGGGGTTGCGGAGCTGTCCTCCAGGGAGGCCAGGGTAGTGTCAGATGAT
AATAAAAAGCATTTACTCCTTAATTTGCTGACTGGAGATATGCTCCTGAATGAGCGACTGGATCGTGAAG
AGCTATGTGGCTCCACCCAGCCCTGTGTGCTGCCCTTTCAGGTGGTACTGGAAAACCCCTTACAGTTCTA
TCGAGCTGAGCTGCACGTCAGAGATATAAATGATCACTCCCCTACATTCCTAGACAAGGAAATAACTATT
AAAATATCAGAAAGCACTACTATCGGAGCCACATTCTTAATTGAGAATGCACAAGATCTGGACATAGGAA
GCAACAGTCTTCAGGACTACAGCATTAGCCCCAGTTCTTATTTCTATGTTAAAATTCATGACAGTGGCGA
TGGAAAGATATACCCGGAGCTGGTTCTGGACAAAGCTTTAGATCATGAGGAGGAATCTGAGCTTAGATTG
ACACTTACAGCATTAGATGGTGGGTCTCCACCCAGGTCTGGGACAACACTGATTGTCATAAAAGTCTTGG
ACATCAACGATAATGCTCCAGAGTTCGCTCAGAGTTTCTATGAGGTGCAGGTCCCAGAGGACATGCCTAT
TGGCTCCAGTATTACTGCCATCTCTGCTAAAGATTTAGATATGGGAATTTATGGGAAAATTTCATATTCA
TTTTTGCATGCATCAGAAGATATTAGAAAAACCTTTGAAATCAACCCAACATCTGGGGAAGTCAATTTGA
GATCACTAATGGATTTTGAAGTAATACAGTCCTATTCTGTAAATATCCAAGCAACAGATGGTGGAGGTCT
TTCTGCAAAATGCACTCTTTCGGTTAAAGTATTAGATATAAATGACAATGCACCAGAAGTGATCATGTCG
TCGGTTACAAAGGCAATTCCAGAAAATGCTTCAGAGACCCTGGTCGCTCTATTCAGTGTCCGAGATCAAG
ACTCTGGAGACAACGGAAGGATCCTTTGCTCTATTCAGGATGACCTTCCATTTATTCTGAAACCAAGCTT
CAAGAATTTTTTCACTCTACTTTCTGAAAAAGCACTAGACAGAGAAAGGAGAGCTGAGTACAACATCACC
ATCACTGCCTCCGACATGGGCACACCCAGGCTCACAACCCAGCACACCATAAGAGTACAGGTATCTGACA
TCAATGACAATGCCCCGGCCTTCACCCAAACCTCCTACACCATGTTCATCTACGAGAACAACAGCCCTGC
CCTGCACATAGGCACCATCAGTGCCACAGACAAAGACTCAGGCTCCAATGCCCACATCACCTACTCGCTG
CTACCGGCTCAGGACCCAGAGCTGGCCCTCGCCTCGCTCATCTCCATTAACGCTGACAACGGGCAGCTAT
TTGCGCTCAGGGCGCTGGACTATGAGGTCCTGCAGGCCTTCGAGTTCCAAGTGGGTGCGACAGACCGAGG
CTCGCCCGCACTCAGCAGCCAGACTCTGGTGCGCGTGGTAGTGCTGGACGACAATGACAATGCGCCCTTC
GTGCTCTACCCGATGCAGAACGCCTCTGCGCCTTGCACTGAGCTGCTGCCCAGGGTGGCAGAACCTGGCT
ACCTGGTCACCAAAGTAGTGGCTGTGGATCGCGACTCTGGCCAGAATGCCTGGCTGTCGTTCCAGCTGCT
CAAGGCTACAGAGCCAGGGCTGTTCAGCGTGTGGGCGCACAATGGCGAGGTACGCACTACCAGGCTGCTG
AGCGAGCGCGATGTGCCCAAGCACAGGCTGGTACTGCTAGTCAAGGACAATGGCGATCCTCCGCGCTCTG
CCAGCGTCACGCTGCACGTGCTAGTGGTGGATGGCTTCTCTCAGCCCTACCTGCCTCTGCCAGAGGTGGC
GCGCGACCCTGCACAAGAAGAAGATGTACTAACACTCTACCTGGTCATAGCCTTGGCATCTGTGTCTTCT
CTCTTCCTCTTGTCTGTGCTGCTGTTTGTGGGGGTGAGGCTGTGCAGGAGGGCCAGGGCTGCCTCTCTGG
GTGGCTGCTCTGTGCCTGAGGGACACTTTCCTGGCCATCTGGTGGACGTTACTGGCACTGGAACCCTGTC
CCAGAACTACCAATATGAGGTGTGTTTCACAGGAGGTACTGGAACGAATGAGTTCAAATTCCTTAGGCCG
GTCATGCCCAGTCTTCAGCTCCATGACCCTGATTCTAATATGCTGGAAAAGGAGAACTTTCGCAATAGCC
TTGGTTTTAATATTCAATAA

Translation (799 aa):
MGRRRALILQKRQVLVFFVFLGLSQASAESLRYSVAEETEIGSFVANLAKDLGLGVAELSSREARVVSDD
NKKHLLLNLLTGDMLLNERLDREELCGSTQPCVLPFQVVLENPLQFYRAELHVRDINDHSPTFLDKEITI
KISESTTIGATFLIENAQDLDIGSNSLQDYSISPSSYFYVKIHDSGDGKIYPELVLDKALDHEEESELRL
TLTALDGGSPPRSGTTLIVIKVLDINDNAPEFAQSFYEVQVPEDMPIGSSITAISAKDLDMGIYGKISYS
FLHASEDIRKTFEINPTSGEVNLRSLMDFEVIQSYSVNIQATDGGGLSAKCTLSVKVLDINDNAPEVIMS
SVTKAIPENASETLVALFSVRDQDSGDNGRILCSIQDDLPFILKPSFKNFFTLLSEKALDRERRAEYNIT
ITASDMGTPRLTTQHTIRVQVSDINDNAPAFTQTSYTMFIYENNSPALHIGTISATDKDSGSNAHITYSL
LPAQDPELALASLISINADNGQLFALRALDYEVLQAFEFQVGATDRGSPALSSQTLVRVVVLDDNDNAPF
VLYPMQNASAPCTELLPRVAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLL
SERDVPKHRLVLLVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVARDPAQEEDVLTLYLVIALASVSS
LFLLSVLLFVGVRLCRRARAASLGGCSVPEGHFPGHLVDVTGTGTLSQNYQYEVCFTGGTGTNEFKFLRP
VMPSLQLHDPDSNMLEKENFRNSLGFNIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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