NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57258.1 Public Mus musculus 3 Pdlim5 23 108 98 CCDS HistoryNCBI Gene:56376Re-query CCDS DB by CCDS ID:57258.1Re-query CCDS DB by GeneID:56376See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57258.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090134.11 ENSMUSP00000087595.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090134.11Link to Ensembl Protein Viewer:ENSMUSP00000087595.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090134Re-query CCDS DB by Protein ID:ENSMUSP00000087595
Original member NCBI NM_001190853.1 NP_001177782.1 Updated not alive Link to Nucleotide Sequence:NM_001190853.1Link to Protein Sequence:NP_001177782.1Re-query CCDS DB by Nucleotide ID:NM_001190853Re-query CCDS DB by Protein ID:NP_001177782
Current member NCBI NM_001190853.2 NP_001177782.1 Accepted alive Link to Nucleotide Sequence:NM_001190853.2Link to Protein Sequence:NP_001177782.1Re-query CCDS DB by Nucleotide ID:NM_001190853Re-query CCDS DB by Protein ID:NP_001177782Link to BLAST:NP_001177782.1

Chromosomal Locations for CCDS 57258.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142303328 142303421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142303943 142303979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142304297 142304469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142304705 142304722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142306284 142306298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142309528 142309544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142314406 142314448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142352734 142352885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142391713 142391808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGAGCAACTACAGTGTGTCATTGGTCGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATT
TCAACATGCCTCTGACAATCTCTAGTCTGAAGGATGGTGGCAAGGCATCTCAGGCACATGTCAGAATAGG
GGACGTGGTTCTCAGCATCGATGGGATCAGTGCACAGGGAATGACGCATCTTGAAGCCCAGAACAAGATT
AAGGCTTGTACGGGCTCCTTGAATATGACTCTACAAAGAGCTTCAGCTGCAGCCAAGAGTGAGCCGGTTT
CCGTCCAGAAGAAAACACACGTGACAAATAACCCTGGCACTGTGAAAATTCCACCTAAACGCCCACCAAG
AAAACACATTGTGGAGCGCAACACGGAGTTTTATCACATACCCACTCACAGTGATGCCAGCAAGAAACGG
CTGATTGAGGACACTGAGGACTGGCGCCCCCGGACTGGAACGACTCAGTCTCGTTCTTTCCGGATCCTTG
CCCAGATCACTGGGACTGAGCATCTGACAGAATCTGAAAATGACAATACGAAGAAGGCAAAGGAAAAGAT
ACCCCTTCACGTCTTTAGTCCCAAATACACAAAATTACGTGACTGGCACCATGAAGTTTCAGCACGTGCT
CTTAATGTACAGTGA

Translation (214 aa):
MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKI
KACTGSLNMTLQRASAAAKSEPVSVQKKTHVTNNPGTVKIPPKRPPRKHIVERNTEFYHIPTHSDASKKR
LIEDTEDWRPRTGTTQSRSFRILAQITGTEHLTESENDNTKKAKEKIPLHVFSPKYTKLRDWHHEVSARA
LNVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH