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Report for CCDS57308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57308.1 Public Mus musculus 4 Iffo2 23 108 98 CCDS HistoryNCBI Gene:212632Re-query CCDS DB by CCDS ID:57308.1Re-query CCDS DB by GeneID:212632See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174078.1 ENSMUSP00000134062.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174078.1Link to Ensembl Protein Viewer:ENSMUSP00000134062.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174078Re-query CCDS DB by Protein ID:ENSMUSP00000134062
Original member NCBI NM_001205173.1 NP_001192102.1 Updated not alive Link to Nucleotide Sequence:NM_001205173.1Link to Protein Sequence:NP_001192102.1Re-query CCDS DB by Nucleotide ID:NM_001205173Re-query CCDS DB by Protein ID:NP_001192102
Current member NCBI NM_001205173.2 NP_001192102.1 Accepted alive Link to Nucleotide Sequence:NM_001205173.2Link to Protein Sequence:NP_001192102.1Re-query CCDS DB by Nucleotide ID:NM_001205173Re-query CCDS DB by Protein ID:NP_001192102Link to BLAST:NP_001192102.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192102.1 512 Q8R2V2 512 100% 0 0

Chromosomal Locations for CCDS 57308.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139574948 139575597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139603213 139603273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139604999 139605094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139606422 139606562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139607605 139607744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139613794 139613914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139614026 139614118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139614931 139615061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139616328 139616433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGTTAACTCGCTGCTGTTCGGAGAGATGGCCTTGGCCTTCGGCTGCCCGCCGGGGGGCGGCGGCTGCG
CAGGCGGCGGCGGGGGTGGCGGGGCCGGGCCGGGGCCCTCGCCCGTAACGGCGGCGCTGCGGGACGATCT
GGGTTCCAACATCCACCTCCTCAAGGGGCTCAACGTGCGTTTCCGCTGCTTCTTGGCCAAGGTGCACGAG
CTGGAGCGGCGCAACCGGCTCCTGGAGAAACAGCTGGAGCAGCAGCAGAGCGAGCGCGATCGGCGGCTGC
GCTACAAGACCTTCTCCCGCGAGCAGGCCGTGCAGACCGGGCCCGAGCTGCTGCGGCCGTCGGCTGCGGG
AAGCGGGCAGGCCCTCGGCGCGGCCACCGGCGTCAACGCCAACGCGGTGGCCCTGGGCGGCCTGCCCCCC
GGCGGCGGCTCGCACCCGCAGCACTACGGTCGCCTGCCCGGGACCATCTGGAGCTACACGCAGGTGCGGC
GCACGGGAGGCGGTGGCGTGGAGACTGTGCAGGGCCCCGGCGTGTCGTGGGTACACCCGGACGGCGTAGG
CGTGCAGATCGACACCATCACGCCAGAGATCCGCGCTCTCTACAACGTGCTGGCCAAGGTGAAGCGCGAG
CGTGACGAGTACAAACGGAGGTGGGAGGAGGAACTGGCCAAACGCATGAACCTTCAGACCATGGTGGACA
CGCTGCAGGAGGCGGCGCAAGAAGCCGAGGCTATCCAGGAGGAGATGAACGAGAAGATTGAGCGGCTCAA
GGCCGAGCTGGTGGTGTTCAAAGGGCTCATGAGTGACCCCATGACAGACCTGGACACAAAGATCCAAGAA
AAGGCTATGAAGGTGGACATGGACATCTGCCGCCGAATCGATATCACGGCTAAGCTGTGTGATGTCGCAC
AGCAGAGGAACTCAGAAGACGTGTCCAAGATCTTCCAGGTGGTCCCTAAGAAGAAAGATCGTAAGGTGGC
TTCGGATGAAGACATCTCGGAGCAGGACGGGGAGGTGAATCGGTTTTCAGATGAGGAGGTCGGCTCCATG
AACATCACTGATGAGATGAAGCGCATGTTTAACCAGCTGCGGGAGACCTTTGATTTTGATGACGACTGTG
ACAGCCTGACGTGGGAAGAGAATGAAGACACACTGCTGCTATGGGAGGATTTTACCAACTGTAACCCAAC
CATTGACCTGCAGGGTGAGCAAGAAGAAAACTTGGGCAACTTGATCCATGAGACCGAATCCTTCTTCAAG
ACGAGAGACAAGGAGTACCAGGAGACCATAGGCCAGATTGAGCTGGAGCTGGCCACAGCCAAGAGCGACA
TGAACCGACACCTTCATGAGTATATGGAAATGTGCAGCATGAAGCGAGGCCTGGACGTGCAGATGGAGAC
CTGCCGTCGGCTCATCAAAGGCTCTGCAGACAGGAATTCACCGTCCCCCAGCTCCGTGGCCAGCAGTGAC
TCAGGAAGTACAGACGAAATCCAGGAAGACCTGGAGCGGGAGGCGGATGTGGAGCCCATGGTCAGCTGA

Translation (512 aa):
MVNSLLFGEMALAFGCPPGGGGCAGGGGGGGAGPGPSPVTAALRDDLGSNIHLLKGLNVRFRCFLAKVHE
LERRNRLLEKQLEQQQSERDRRLRYKTFSREQAVQTGPELLRPSAAGSGQALGAATGVNANAVALGGLPP
GGGSHPQHYGRLPGTIWSYTQVRRTGGGGVETVQGPGVSWVHPDGVGVQIDTITPEIRALYNVLAKVKRE
RDEYKRRWEEELAKRMNLQTMVDTLQEAAQEAEAIQEEMNEKIERLKAELVVFKGLMSDPMTDLDTKIQE
KAMKVDMDICRRIDITAKLCDVAQQRNSEDVSKIFQVVPKKKDRKVASDEDISEQDGEVNRFSDEEVGSM
NITDEMKRMFNQLRETFDFDDDCDSLTWEENEDTLLLWEDFTNCNPTIDLQGEQEENLGNLIHETESFFK
TRDKEYQETIGQIELELATAKSDMNRHLHEYMEMCSMKRGLDVQMETCRRLIKGSADRNSPSPSSVASSD
SGSTDEIQEDLEREADVEPMVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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