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Report for CCDS5743.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5743.2 Public Homo sapiens 7 COG5 24 110 108 CCDS HistoryNCBI Gene:10466Re-query CCDS DB by CCDS ID:5743.2Re-query CCDS DB by GeneID:10466See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5743.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347053.8 ENSP00000334703.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347053.8Link to Ensembl Protein Viewer:ENSP00000334703.3Re-query CCDS DB by Nucleotide ID:ENST00000347053Re-query CCDS DB by Protein ID:ENSP00000334703
Original member Current member NCBI NM_181733.4 NP_859422.3 Accepted alive Link to Nucleotide Sequence:NM_181733.4Link to Protein Sequence:NP_859422.3Re-query CCDS DB by Nucleotide ID:NM_181733Re-query CCDS DB by Protein ID:NP_859422Link to BLAST:NP_859422.3

Chromosomal Locations for CCDS 5743.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 107203516 107203630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107210526 107210605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107211099 107211225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107230615 107230691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107236450 107236687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107248396 107248499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107258273 107258383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107281300 107281399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107283571 107283732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107298142 107298346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107324440 107324521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107362033 107362110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107362308 107362420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107372595 107372760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107412502 107412632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107527237 107527357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107548111 107548180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107548278 107548332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107554285 107554342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107557976 107558115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107563803 107563896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2427 nt):
ATGGAAGGTGGCGGCGGCAGCGTCGCTGTAGCTGGCCTCGGAGCTCGAGGCTCTGGAGCGGCTGCAGCTA
CAGTCCGGGAACTTCTGCAGGACGGGTGTTATAGTGACTTTTTAAACGAAGACTTTGATGTAAAGACTTA
TACTTCTCAATCTATTCATCAAGCTGTAATTGCTGAACAACTAGCAAAACTTGCCCAAGGAATCAGTCAG
TTGGACAGAGAACTACACTTACAGGTTGTTGCAAGACATGAAGATTTACTGGCACAAGCAACTGGGATTG
AGTCGTTGGAAGGTGTTCTTCAGATGATGCAGACGAGAATTGGGGCTTTACAGGGAGCTGTTGATAGGAT
AAAAGCAAAAATTGTTGAACCATACAATAAGATAGTTGCCCGGACTGCACAACTAGCAAGACTTCAGGTT
GCCTGTGATTTGCTTCGGAGGATTATTCGTATCTTGAATCTCAGTAAGAGACTCCAAGGACAACTGCAAG
GGGGAAGTAGAGAGATAACAAAAGCTGCTCAGAGTCTCAATGAACTTGATTATCTTTCTCAAGGAATAGA
TCTTTCTGGAATAGAAGTGATAGAAAATGATCTACTTTTTATTGCAAGAGCCCGACTTGAAGTGGAAAAT
CAAGCTAAGCGCCTACTAGAGCAGGGTTTGGAGACTCAGAATCCAACTCAAGTCGGAACAGCTCTTCAGG
TTTTCTATAATCTTGGAACTTTGAAGGATACTATTACCAGTGTTGTGGATGGATATTGTGCTACTTTAGA
AGAAAATATCAACAGTGCATTAGACATAAAAGTTTTGACTCAGCCTTCCCAGTCAGCTGTGAGAGGGGGA
CCTGGACGATCTACCATGCCAACCCCAGGAAATACTGCAGCTTTGCGTGCCTCATTCTGGACCAATATGG
AGAAACTTATGGATCATATTTATGCTGTTTGTGGACAGGTACAACATCTACAAAAAGTATTGGCCAAGAA
GAGAGATCCTGTTTCTCACATTTGTTTCATTGAAGAAATAGTTAAGGATGGACAACCGGAAATTTTCTAC
ACATTTTGGAATTCAGTTACTCAGGCACTTTCTTCTCAATTTCATATGGCAACAAACTCTTCGATGTTTT
TGAAGCAGGCATTTGAAGGAGAATACCCTAAATTATTACGTCTTTATAATGACTTATGGAAGCGTCTTCA
ACAATACAGTCAGCATATCCAAGGGAATTTTAATGCAAGTGGAACTACAGACCTCTATGTTGACCTACAA
CACATGGAAGATGATGCACAAGATATATTCATACCAAAAAAGCCAGATTATGATCCAGAAAAGGCTTTGA
AAGACTCACTACAACCCTATGAGGCTGCTTATCTATCAAAATCCTTATCTCGACTCTTCGATCCTATCAA
CTTGGTTTTTCCCCCGGGTGGTCGTAATCCTCCTTCCTCTGATGAACTTGATGGTATTATTAAAACTATA
GCAAGTGAACTAAATGTTGCTGCTGTTGATACAAACCTCACATTAGCTGTGTCAAAAAATGTGGCAAAGA
CCATCCAGTTATACAGTGTAAAATCAGAGCAGCTTCTCTCCACACAAGGAGATGCAAGTCAGGTGATTGG
GCCTCTTACTGAAGGACAGAGAAGAAATGTGGCAGTAGTGAATTCATTGTATAAGTTGCACCAATCAGTA
ACAAAGGCTATTCATGCTCTTATGGAAAATGCTGTGCAACCCTTACTCACTTCTGTGGGAGATGCTATAG
AGGCCATAATCATCACCATGCATCAAGAAGACTTTTCTGGGTCATTATCCAGCTCAGGAAAACCTGATGT
TCCTTGTTCTCTGTACATGAAGGAGCTACAAGGTTTCATTGCCAGAGTTATGAGTGACTATTTTAAACAC
TTTGAATGCTTGGATTTTGTCTTTGACAACACTGAGGCTATTGCCCAAAGAGCTGTTGAACTTTTTATCC
GCCATGCCAGTCTCATAAGACCTCTTGGTGAAGGTGGGAAAATGCGACTTGCTGCTGATTTTGCACAGAT
GGAGTTGGCTGTGGGTCCATTCTGTAGACGAGTATCTGATTTAGGAAAGTCCTATCGGATGCTGAGATCA
TTCAGACCTCTGCTCTTCCAGGCAAGTGAACATGTAGCCAGTAGTCCTGCATTGGGGGATGTGATTCCGT
TCAGCATCATTATTCAGTTTTTGTTCACGAGAGCACCCGCTGAACTGAAATCTCCTTTCCAGAGGGCAGA
GTGGTCCCACACACGCTTCTCTCAGTGGCTGGATGACCATCCATCTGAAAAGGACAGGCTCCTCCTCATC
AGGGGAGCCCTGGAAGCTTATGTTCAATCAGTGAGAAGTAGAGAAGGCAAAGAATTTGCACCAGTTTATC
CCATAATGGTTCAGCTGCTTCAAAAGGCTATGTCTGCTCTTCAGTAA

Translation (808 aa):
MEGGGGSVAVAGLGARGSGAAAATVRELLQDGCYSDFLNEDFDVKTYTSQSIHQAVIAEQLAKLAQGISQ
LDRELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQGAVDRIKAKIVEPYNKIVARTAQLARLQV
ACDLLRRIIRILNLSKRLQGQLQGGSREITKAAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVEN
QAKRLLEQGLETQNPTQVGTALQVFYNLGTLKDTITSVVDGYCATLEENINSALDIKVLTQPSQSAVRGG
PGRSTMPTPGNTAALRASFWTNMEKLMDHIYAVCGQVQHLQKVLAKKRDPVSHICFIEEIVKDGQPEIFY
TFWNSVTQALSSQFHMATNSSMFLKQAFEGEYPKLLRLYNDLWKRLQQYSQHIQGNFNASGTTDLYVDLQ
HMEDDAQDIFIPKKPDYDPEKALKDSLQPYEAAYLSKSLSRLFDPINLVFPPGGRNPPSSDELDGIIKTI
ASELNVAAVDTNLTLAVSKNVAKTIQLYSVKSEQLLSTQGDASQVIGPLTEGQRRNVAVVNSLYKLHQSV
TKAIHALMENAVQPLLTSVGDAIEAIIITMHQEDFSGSLSSSGKPDVPCSLYMKELQGFIARVMSDYFKH
FECLDFVFDNTEAIAQRAVELFIRHASLIRPLGEGGKMRLAADFAQMELAVGPFCRRVSDLGKSYRMLRS
FRPLLFQASEHVASSPALGDVIPFSIIIQFLFTRAPAELKSPFQRAEWSHTRFSQWLDDHPSEKDRLLLI
RGALEAYVQSVRSREGKEFAPVYPIMVQLLQKAMSALQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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