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Report for CCDS575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
575.1 Public Homo sapiens 1 CPT2 24 110 108 CCDS HistoryNCBI Gene:1376Re-query CCDS DB by CCDS ID:575.1Re-query CCDS DB by GeneID:1376See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 575.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371486.4 ENSP00000360541.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371486.4Link to Ensembl Protein Viewer:ENSP00000360541.3Re-query CCDS DB by Nucleotide ID:ENST00000371486Re-query CCDS DB by Protein ID:ENSP00000360541
Original member Current member NCBI NM_000098.3 NP_000089.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000098.3Link to Protein Sequence:NP_000089.1Re-query CCDS DB by Nucleotide ID:NM_000098Re-query CCDS DB by Protein ID:NP_000089Link to BLAST:NP_000089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000089.1 658 P23786 658 100% 0 0

Chromosomal Locations for CCDS 575.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53196944 53197095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53200719 53200799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53202323 53202429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53210015 53211319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53213264 53213595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGGTGCCCCGCCTGCTGCTGCGCGCCTGGCCCCGGGGCCCCGCGGTTGGTCCGGGAGCCCCCAGTCGGC
CCCTCAGCGCCGGCTCCGGGCCCGGCCAGTACCTGCAGCGCAGCATCGTGCCCACCATGCACTACCAGGA
CAGCCTGCCCAGGCTGCCTATTCCCAAACTTGAAGACACCATTAGGAGATACCTCAGTGCACAGAAGCCT
CTCTTGAATGATGGCCAGTTCAGGAAAACAGAACAATTTTGCAAGAGTTTTGAAAATGGGATTGGAAAAG
AACTGCATGAGCAGCTGGTTGCTCTGGACAAACAGAATAAACATACAAGCTACATTTCGGGACCCTGGTT
TGATATGTACCTATCTGCTCGAGACTCCGTTGTTCTGAACTTTAATCCATTTATGGCTTTCAATCCTGAC
CCAAAATCTGAGTATAATGACCAGCTCACCCGGGCAACCAACATGACTGTTTCTGCCATCCGGTTTCTGA
AGACACTCCGGGCTGGCCTTCTGGAGCCAGAAGTGTTCCACTTGAACCCTGCAAAAAGTGACACTATCAC
CTTCAAGAGACTCATACGCTTTGTGCCTTCCTCTCTGTCCTGGTATGGGGCCTACCTGGTCAATGCGTAT
CCCCTGGATATGTCCCAGTATTTTCGGCTTTTCAACTCAACTCGTTTACCCAAACCCAGTCGGGATGAAC
TCTTCACTGATGACAAGGCCAGACACCTCCTGGTCCTAAGGAAAGGAAATTTTTATATCTTTGATGTCCT
GGATCAAGATGGGAACATTGTGAGCCCCTCGGAAATCCAGGCACATCTGAAGTACATTCTCTCAGACAGC
AGCCCCGCCCCCGAGTTTCCCCTGGCATACCTGACCAGTGAGAACCGAGACATCTGGGCAGAGCTCAGGC
AGAAGCTGATGAGTAGTGGCAATGAGGAGAGCCTGAGGAAAGTGGACTCGGCAGTGTTCTGTCTCTGCCT
AGATGACTTCCCCATTAAGGACCTTGTCCACTTGTCCCACAATATGCTGCATGGGGATGGCACAAACCGC
TGGTTTGATAAATCCTTTAACCTCATTATCGCCAAGGATGGCTCTACTGCCGTCCACTTTGAGCACTCTT
GGGGTGATGGTGTGGCAGTGCTCAGATTTTTTAATGAAGTATTTAAAGACAGCACTCAGACCCCTGCCGT
CACTCCACAGAGCCAGCCAGCTACCACTGACTCTACTGTCACGGTGCAGAAACTCAACTTCGAGCTGACT
GATGCCTTAAAGACTGGCATCACAGCTGCTAAGGAAAAGTTTGATGCCACCATGAAAACCCTCACTATTG
ACTGCGTCCAGTTTCAGAGAGGAGGCAAAGAATTCCTGAAGAAGCAAAAGCTGAGCCCTGACGCAGTTGC
CCAGCTGGCATTCCAGATGGCCTTCCTGCGGCAGTACGGGCAGACAGTGGCCACCTACGAGTCCTGTAGC
ACTGCCGCATTCAAGCACGGCCGCACTGAGACCATCCGCCCGGCCTCCGTCTATACAAAGAGGTGCTCTG
AGGCCTTTGTCAGGGAGCCCTCCAGGCACAGTGCTGGTGAGCTTCAGCAGATGATGGTTGAGTGCTCCAA
GTACCATGGCCAGCTGACCAAAGAAGCAGCAATGGGCCAGGGCTTTGACCGACACTTGTTTGCTCTGCGG
CATCTGGCAGCAGCCAAAGGGATCATCTTGCCTGAGCTCTACCTGGACCCTGCATACGGGCAGATAAACC
ACAATGTCCTGTCCACGAGCACACTGAGCAGCCCAGCAGTGAACCTTGGGGGCTTTGCCCCTGTGGTCTC
TGATGGCTTTGGTGTTGGGTATGCTGTTCATGACAACTGGATAGGCTGCAATGTCTCTTCCTACCCAGGC
CGCAATGCCCGGGAGTTTCTCCAATGTGTGGAGAAGGCCTTAGAAGACATGTTTGATGCCTTAGAAGGCA
AATCCATCAAAAGTTAA

Translation (658 aa):
MVPRLLLRAWPRGPAVGPGAPSRPLSAGSGPGQYLQRSIVPTMHYQDSLPRLPIPKLEDTIRRYLSAQKP
LLNDGQFRKTEQFCKSFENGIGKELHEQLVALDKQNKHTSYISGPWFDMYLSARDSVVLNFNPFMAFNPD
PKSEYNDQLTRATNMTVSAIRFLKTLRAGLLEPEVFHLNPAKSDTITFKRLIRFVPSSLSWYGAYLVNAY
PLDMSQYFRLFNSTRLPKPSRDELFTDDKARHLLVLRKGNFYIFDVLDQDGNIVSPSEIQAHLKYILSDS
SPAPEFPLAYLTSENRDIWAELRQKLMSSGNEESLRKVDSAVFCLCLDDFPIKDLVHLSHNMLHGDGTNR
WFDKSFNLIIAKDGSTAVHFEHSWGDGVAVLRFFNEVFKDSTQTPAVTPQSQPATTDSTVTVQKLNFELT
DALKTGITAAKEKFDATMKTLTIDCVQFQRGGKEFLKKQKLSPDAVAQLAFQMAFLRQYGQTVATYESCS
TAAFKHGRTETIRPASVYTKRCSEAFVREPSRHSAGELQQMMVECSKYHGQLTKEAAMGQGFDRHLFALR
HLAAAKGIILPELYLDPAYGQINHNVLSTSTLSSPAVNLGGFAPVVSDGFGVGYAVHDNWIGCNVSSYPG
RNAREFLQCVEKALEDMFDALEGKSIKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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