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Report for CCDS57585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57585.1 Public Mus musculus 7 Sez6l2 23 108 98 CCDS HistoryNCBI Gene:233878Re-query CCDS DB by CCDS ID:57585.1Re-query CCDS DB by GeneID:233878See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57585.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106335.7 ENSMUSP00000101942.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106335.7Link to Ensembl Protein Viewer:ENSMUSP00000101942.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106335Re-query CCDS DB by Protein ID:ENSMUSP00000101942
Original member Current member NCBI NM_001252566.1 NP_001239495.1 Accepted alive Link to Nucleotide Sequence:NM_001252566.1Link to Protein Sequence:NP_001239495.1Re-query CCDS DB by Nucleotide ID:NM_001252566Re-query CCDS DB by Protein ID:NP_001239495Link to BLAST:NP_001239495.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239495.1 910 Q4V9Z5-1 910 100% 0 0

Chromosomal Locations for CCDS 57585.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126951038 126951116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126952000 126952131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126952774 126953073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126953385 126953524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126953715 126953916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126958269 126958454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126959047 126959215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126959791 126959954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126961737 126961937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126962353 126962491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126963265 126963461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126963563 126963757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126966725 126966916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126967014 126967205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126967927 126968044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126968160 126968256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126970053 126970082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2733 nt):
ATGGGGACTCCCAAGGCCCAGCACCCGCCGCCTTCCCAGCTGCTGCTCCTAATTCTGCTGAGCTGTGCCT
GG
ATTGAGGGTCTGCCCCTGAAGGAGGATGAGATGATGCCAGAGCCTGGAAGTGAGACTCCCACAGTGGC
C
TCTGAGGACCTGGCTGAGCTGCTCCATGGGGCTTTGCTGCGGAAGGGCCCAGAGATCGGCTTCTTGCCG
G
GA
TCTGACCCAGACCCCACACTAGCCACCCCTCCAGCCGGCCAGACTCTTGCAGCACCTTCCCTGCCAC
GT
GCCACTGAGCCAGGGACAGGGCCTCTGACGACAGCTGTCACCCCCAAGGGAGTCAGGGGGGCAGGCCC
C
ACCGCGCCAGAGCTGCTGACCCCACCCCCTGGAACTACAGCCCCGCCCCCGCCTGGCCCCGCCTCCCCA
GTC
CCACCCCTCAGGCCTGAGGGAGGAGAGGAGGAAACCACCACCACCATCATCACCACAACAACTGTCA
CC
ACCACTGTCACCAGCCCAGTTCTGTGCAATAACAACATCTCGGAGGGCGAAGGGTTTGTGGAGTCTCC
G
GACTTGGGGAGCACTGCCAGCCGCTCCGTGGAGCTCCTAGATTGCACCTACAGCATCCATGTCTACCCT
GGT
TATGGCATTGAGATTCAGGTGCAGACACTCAACCTGTCTCAGGAGGAAGAACTTCTGGTGTTGGCCG
GT
GGGGGTTCTCCAGGCCTGGCCCCCAGACTCCTGGCCAATTCCTCCATGCTGGGAGAAGGACAAGTGCT
G
CGGAGCCCAACAAACCGGCTGCTCCTGCATTTCCAGAGTCCTCGAGTCCCAAGGGGCAATGGCTTCAGG
ATT
CACTATCAGGCATACCTTCTGAGCTGCGGCTTCCCACCCCGGCCAGCCCACGGGGATGTGAGCGTGA
CA
GACTTGCATCCTGGGGGCACTGCCACCTTCCACTGTGACTCAGGATACCAGCTACAGGGTGAGGAGAC
C
CTCATTTGCCTCAATGGTACCCGGCCAGCCTGGACTGGTGAACCCCCTAGCTGTACAGCATCTTGTGGT
GGC
ACCATCCACAATGCCACACTGGGTCGCATTGTATCCCCTGAGCCTGGGGGAGCTGCAGGGCCCAACC
TC
ACCTGCCGCTGGGTCATTGAAGCGGCCGAGGGACGCCGGCTTCACCTACACTTTGAGAGAGTCTCACT
G
GATGAGGACAATGACCGGCTGATGGTGCGCTCAGGGGGAAGCCCCCTGTCCCCTGTGATTTACGACTCT
GAC
ATGGATGATGTCCCTGAACGCGGTCTCATCAGTGATGCCCAGTCCCTCTACGTAGAACTGCTTTCAG
AG
ACACCAGCCAACCCCCTGCTGCTCAGCCTCCGATTTGAAGCCTTTGAGGAGGACCGCTGCTTCCCCCC
G
TTCCTGGCTCACGGCAATGTGACCACTACAGATCCTGAGTTCCACCCAGGAGCACTGGCCACCTTCTCA
TGC
CTCCCAGGATATGCTCTGGAGCCACCAGGACCCCCCAATGCTATCGAATGTGTGGATCCCACCGAAC
CC
CACTGGAACGACACAGAGCCAGCCTGCAAGGCCATGTGTGGAGGAGAGCTGTCTGAGCCAGCTGGTGT
G
GTACTCTCTCCCGACTGGCCCCAGAGTTACAGCCCTGGCCAAGACTGCGTGTGGGGCCTGCACGTCCAG
GAA
GAGAAGCGCATCTTGCTCCAAGTTGAAATCTTGAATGTTCGCGAAGGGGATATGCTAACACTGTTCG
AC
GGGGACGGTCCGAGCGCTCGAGTCCTGGCCCAGCTGCGAGGACCTCAGCCGCGCCGCCGCCTCCTCTC
C
TCTGGACCTGATCTCACTCTGCAGTTTCAGGCACCCCCTGGTCCCCCAAATCCGGGCCTAGGCCAGGGT
TTC
GTGTTACATTTCAAAGAGGTCCCGAGAAACGATACGTGCCCGGAGCTACCACCACCTGAGTGGGGCT
GG
AGGACAGCATCCCACGGGGACCTTATCCGGGGTACAGTGCTCACCTATCAATGCGAGCCTGGCTATGA
A
CTACTGGGATCAGACATCCTCACTTGCCAATGGGACCTGTCCTGGAGCGCGGCGCCACCTGCCTGCCAA
AAG
ATCATGACTTGTGCTGACCCTGGCGAGATCACCAATGGCCATCGGACTGCCTCAGATGCTGGTTTCC
CT
GTGGGCTCCCACGTCCAGTATCGCTGTCTGCCAGGGTACAGCCTGGAAGGAGCAGCTGTGCTCACCTG
C
TACAGCCGGGACACAGGCACACCCAAGTGGAGTGATCGGGTCCCCAAATGCGCCTTAAAGTACGAGCCG
TGC
CTGAACCCCGGTGTTCCTGAGAATGGTTACCAAACTCTGTACAAGCATCACTACCAAGCGGGCGAGT
CG
CTACGCTTCTTCTGCTACGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACATGTGTACCCGGTCA
C
CCCTCCCAGTGGACCAGCCAGCCCCCACTCTGCAAAGTGACCCAGACTACAGACCCATCACGGCAGCTG
GAG
GGTGGTAATCTCGCTTTGGCCATCCTGTTGCCCCTGGGCTTGGTCATTGTCCTTGGCATTGGCGTTT
AC
ATATACTACACTAAGCTACAAGGAAAATCCCTCTTTGGCTTCTCGGGTTCTCACTCTTACAGTCCCAT
T
ACGGTGGAGTCAGACTTCAGCAACCCACTGTATGAAGCTGGGGATACGAGGGAGTATGAAGTTTCCATC
TGA


Translation (910 aa):
MGTPKAQHPPPSQLLLLILLSCAWIEGLPLKEDEMMPEPGSETPTVASEDLAELLHGALLRKGPEIGFLP
G
SDPDPTLATPPAGQTLAAPSLPRATEPGTGPLTTAVTPKGVRGAGPTAPELLTPPPGTTAPPPPGPASP
V
PPLRPEGGEEETTTTIITTTTVTTTVTSP
VLCNNNISEGEGFVESPDLGSTASRSVELLDCTYSIHVYP
G
YGIEIQ
VQTLNLSQEEELLVLAGGGSPGLAPRLLANSSMLGEGQVLRSPTNRLLLHFQSPRVPRGNGFR
I
HYQ
AYLLSCGFPPRPAHGDVSVTDLHPGGTATFHCDSGYQLQGEETLICLNGTRPAWTGEPPSCTASCG
G
TIHNATLGRIVSPEPGGAAGPNLTCRWVIEAAEGRRLHLHFERVSLDEDND
RLMVRSGGSPLSPVIYDS
D
MDDVPERGLISDAQSLYVELLSETPANPLLLSLRFE
AFEEDRCFPPFLAHGNVTTTDPEFHPGALATFS
C
LPGYALEPPGPPNAIECVDPTEPHWNDTEPACK
AMCGGELSEPAGVVLSPDWPQSYSPGQDCVWGLHVQ
E
EKRILLQVE
ILNVREGDMLTLFDGDGPSARVLAQLRGPQPRRRLLSSGPDLTLQFQAPPGPPNPGLGQG
F
VLHFK
EVPRNDTCPELPPPEWGWRTASHGDLIRGTVLTYQCEPGYELLGSDILTCQWDLSWSAAPPACQ
K
IMTCADPGEITNGHRTASDAGFPVGSHVQYRCLPGYSLEGAAVLTCYSRDTGTPKWSDRVPKCALKYEP
C
LNPGVPENGYQTLYKHHYQAGESLRFFCYEGFELIGEVTITCVPGHPSQWTSQPPLCK
VTQTTDPSRQL
E
GGNLALAILLPLGLVIVLGIGVYIYYT
KLQGKSLFGFSGSHSYSPITVESDFSNPLYEAGDTREYEVSI



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser