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Report for CCDS5762.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5762.1 Public Homo sapiens 7 TFEC 24 110 108 CCDS HistoryNCBI Gene:22797Re-query CCDS DB by CCDS ID:5762.1Re-query CCDS DB by GeneID:22797See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5762.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265440.12 ENSP00000265440.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265440.12Link to Ensembl Protein Viewer:ENSP00000265440.7Re-query CCDS DB by Nucleotide ID:ENST00000265440Re-query CCDS DB by Protein ID:ENSP00000265440
Original member Current member NCBI NM_012252.4 NP_036384.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012252.4Link to Protein Sequence:NP_036384.1Re-query CCDS DB by Nucleotide ID:NM_012252Re-query CCDS DB by Protein ID:NP_036384Link to BLAST:NP_036384.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036384.1 347 O14948-1 347 100% 0 0

Chromosomal Locations for CCDS 5762.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 115940551 115940931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115941893 115942040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115950874 115950949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115954586 115954642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115956679 115956793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115974170 115974256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115984262 115984441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGACCCTTGATCATCAGATCATCAATCCAACTCTTAAATGGTCACAACCTGCAGTGCCAAGTGGTGGGC
CTCTTGTGCAGCATGCACACACAACTCTGGACAGTGATGCTGGCCTCACAGAAAACCCACTCACCAAGTT
ACTAGCTATTGGGAAAGAAGATGACAATGCACAATGGCATATGGAGGACGTTATTGAGGATATAATCGGT
ATGGAATCAAGTTTTAAAGAGGAAGGAGCAGACTCTCCTCTGCTAATGCAAAGAACATTATCTGGAAGTA
TTTTGGATGTGTATAGCGGTGAACAAGGAATTTCACCAATTAACATGGGGCTTACAAGTGCTTCTTGTCC
AAGTAGTCTACCAATGAAAAGAGAAATTACAGAAACTGACACTAGAGCTTTAGCAAAAGAGAGACAAAAA
AAGGACAACCACAACCTCATTGAAAGAAGAAGAAGGTATAATATTAATTACCGAATCAAGGAGCTTGGCA
CTCTTATTCCAAAGTCTAATGATCCTGATATGCGCTGGAACAAAGGAACCATTCTAAAAGCATCAGTGGA
GTACATCAAGTGGCTACAAAAAGAACAACAGAGAGCCCGAGAATTGGAACACAGACAGAAGAAATTAGAG
CAGGCTAACAGGCGACTTCTACTTCGGATTCAGGAACTAGAAATTCAGGCTCGTACTCATGGTCTGCCAA
CCCTGGCTTCACTTGGCACGGTTGATTTAGGTGCTCATGTCACCAAACAGCAGAGCCATCCTGAGCAGAA
TTCAGTAGACTATTGCCAACAACTGACTGTGTCTCAGGGGCCAAGCCCTGAGCTCTGTGATCAAGCTATA
GCCTTTTCTGATCCTTTGTCATACTTCACAGATTTATCATTTAGTGCTGCATTGAAAGAGGAACAAAGAT
TGGATGGCATGCTATTGGATGACACAATCTCTCCATTTGGAACAGATCCTCTGCTATCTGCCACTTCCCC
TGCAGTTTCCAAAGAAAGCAGTAGGAGAAGTAGCTTTAGCTCAGATGATGGTGATGAATTATAA

Translation (347 aa):
MTLDHQIINPTLKWSQPAVPSGGPLVQHAHTTLDSDAGLTENPLTKLLAIGKEDDNAQWHMEDVIEDIIG
MESSFKEEGADSPLLMQRTLSGSILDVYSGEQGISPINMGLTSASCPSSLPMKREITETDTRALAKERQK
KDNHNLIERRRRYNINYRIKELGTLIPKSNDPDMRWNKGTILKASVEYIKWLQKEQQRARELEHRQKKLE
QANRRLLLRIQELEIQARTHGLPTLASLGTVDLGAHVTKQQSHPEQNSVDYCQQLTVSQGPSPELCDQAI
AFSDPLSYFTDLSFSAALKEEQRLDGMLLDDTISPFGTDPLLSATSPAVSKESSRRSSFSSDDGDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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