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Report for CCDS57645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57645.1 Public Mus musculus 8 Ddx19b 23 108 98 CCDS HistoryNCBI Gene:234733Re-query CCDS DB by CCDS ID:57645.1Re-query CCDS DB by GeneID:234733See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57645.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065784.5 ENSMUSP00000066806.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065784.5Link to Ensembl Protein Viewer:ENSMUSP00000066806.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065784Re-query CCDS DB by Protein ID:ENSMUSP00000066806
Original member Current member NCBI NM_001190786.1 NP_001177715.1 Accepted alive Link to Nucleotide Sequence:NM_001190786.1Link to Protein Sequence:NP_001177715.1Re-query CCDS DB by Nucleotide ID:NM_001190786Re-query CCDS DB by Protein ID:NP_001177715Link to BLAST:NP_001177715.1

Chromosomal Locations for CCDS 57645.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111008250 111008311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111008650 111008841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111009181 111009343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111010721 111010958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111011285 111011462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111012754 111012868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111015565 111015667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111020629 111020721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111020960 111021095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111022401 111022454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111023966 111024014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111031622 111031723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGTTGCGCCGCGATGGCCGGAGCTGCTGGCCGGGTCGAGGTCGAGCCCGAGCCCGAGCCCAAGCCCAAG
CTCGGAATCCACTTTCCCTGCCCCTGACTGGTTTGAGCAACTTGCATCTTAAGGAGGAGAAAATCAAACC
AGATGCCAATGGTGCTGTTGTTAAGACCAATGCAAACACAGAGAAGACAGAGGAAGATGAGAAAGAGGAC
AGAGCTGCTCAGTCTTTACTCAACAAGCTGATCAGAAGCAATCTTGTGGATAACACCAACCAAGTGGAAG
TCCTGCAGAGGGACCCAAGCTCCCCGCTCTACTCAGTGAAGTCCTTCGAAGAGCTTCGCCTGAAACCACA
GCTTCTCCAGGGAGTCTATGCTATGGGTTTCAACCGCCCTTCCAAAATACAGGAAAATGCATTGCCTTTG
ATGCTTGCTGAACCCCCACAGAACTTAATTGCCCAGTCTCAGTCTGGTACGGGTAAAACAGCTGCCTTTG
TTTTGGCTGTGCTCAGCCAAGTAGAGCCTGCAAACAAGTTTGCCCAGTGTCTCTGCCTCTCTCCAACCTA
TGAGCTTGCTCTTCAAACAGGAAAAGTGATTGAGCAGATGGGCAAGTTTTACCCTGAACTGAAGCTAGCT
TATGCTGTTCGAGGCAACAAATTGGAGAGGGGTCAGAAGGTGAGTGAGCAGATTGTCATTGGCACCCCCG
GGACCGTCTTGGACTGGTGCTCCAAGCTGAAGTTCATTGACCCCAAGAAGATCAAGGTGTTTGTTCTGGA
CGAGGCTGATGTGATGATAGCGACTCAGGGCCACCAAGACCAGAGCATCCGCATCCAGAGGATGCTGCCC
AGAAACTGCCAGATGCTGCTTTTCTCGGCCACCTTTGAAGACTCGGTGTGGAAGTTTGCCCAGAAGGTGG
TCCCAGACCCCAACATCATCAAGCTGAAGCGTGAGGAGGAGACTCTGGACACCATCAAACAGTACTACGT
CCTCTGCAATAACAGAGAGGAGAAGTTCCAGGCCCTGTGCAATCTGTATGGGGCCATCACCATCGCCCAA
GCCATGATCTTCTGCCATACCCGCAAAACAGCTAGCTGGCTGGCAGCAGAGCTCTCAAAAGAGGGCCACC
AGGTGGCCCTGCTGAGTGGAGAGATGATGGTGGAGCAGAGGGCTGCGGTGATCGAGCGCTTCCGAGAAGG
CAAAGAGAAGGTTCTGGTGACCACCAACGTGTGTGCCCGTGGTATCGATGTTGAACAGGTGTCTGTCGTC
ATCAATTTTGACCTCCCTGTGGACAAGGACGGGAACCCAGACAATGAGACCTACCTGCACCGCATTGGGC
GCACTGGCCGCTTTGGCAAGAGGGGTCTGGCGGTCAACATGGTGGACAGCAAGCACAGCATGAATATCCT
CAACAGGATCCAGGAGCATTTTAATAAGAAGATAGAAAGACTGGACACAGATGATTTGGACGAGATTGAG
AAAATCGCCAACTGA

Translation (494 aa):
MLRRDGRSCWPGRGRARARAQAQARNPLSLPLTGLSNLHLKEEKIKPDANGAVVKTNANTEKTEEDEKED
RAAQSLLNKLIRSNLVDNTNQVEVLQRDPSSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPL
MLAEPPQNLIAQSQSGTGKTAAFVLAVLSQVEPANKFAQCLCLSPTYELALQTGKVIEQMGKFYPELKLA
YAVRGNKLERGQKVSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP
RNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQALCNLYGAITIAQ
AMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV
INFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE
KIAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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