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Report for CCDS57960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57960.1 Public Homo sapiens 1 INTS11 24 110 108 CCDS HistoryNCBI Gene:54973Re-query CCDS DB by CCDS ID:57960.1Re-query CCDS DB by GeneID:54973See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57960.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540437.5 ENSP00000445001.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540437.5Link to Ensembl Protein Viewer:ENSP00000445001.1Re-query CCDS DB by Nucleotide ID:ENST00000540437Re-query CCDS DB by Protein ID:ENSP00000445001
Original member Current member NCBI NM_001256456.2 NP_001243385.1 Accepted alive Link to Nucleotide Sequence:NM_001256456.2Link to Protein Sequence:NP_001243385.1Re-query CCDS DB by Nucleotide ID:NM_001256456Re-query CCDS DB by Protein ID:NP_001243385Link to BLAST:NP_001243385.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243385.1 606 Q5TA45-5 606 100% 0 0

Chromosomal Locations for CCDS 57960.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1311859 1311924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1312018 1312147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1312226 1312368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1312440 1312501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1312593 1312700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1312787 1312949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1313035 1313124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1313509 1313592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1313732 1313921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1314301 1314365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1314824 1314962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1315404 1315438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1315520 1315618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1319296 1319524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1320456 1320529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1320996 1321093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1321908 1321953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGTGTGGTGCTGGCTTTGGACACTTCGAGTGGCTGGCAGGGGGAGGGGCCGGCCAGGACGTGGGCCGAA
GCTGCATCCTGGTCTCCATTGCGGGCAAGAATGTCATGCTGGACTGTGGAATGCACATGGGCTTCAATGA
CGACCGACGCTTCCCTGACTTCTCCTACATCACCCAGAACGGCCGCCTAACAGACTTCCTGGACTGTGTG
ATCATTAGCCACTTCCACCTGGACCACTGCGGGGCACTCCCCTACTTCAGCGAGATGGTGGGCTACGACG
GGCCCATCTACATGACTCACCCCACCCAGGCCATCTGCCCCATCTTGCTGGAGGACTACCGCAAGATCGC
CGTAGACAAGAAGGGCGAGGCCAACTTCTTCACCTCCCAGATGATCAAAGACTGCATGAAGAAGGTGGTG
GCTGTCCACCTCCACCAGACGGTCCAGGTAGATGATGAGCTGGAGATCAAGGCCTACTATGCAGGCCACG
TGCTGGGGGCAGCCATGTTCCAGATTAAAGTGGGCTCAGAGTCTGTGGTCTACACGGGTGATTATAACAT
GACCCCAGACCGACACTTAGGAGCTGCCTGGATTGACAAGTGCCGCCCCAACCTGCTCATCACAGAGTCC
ACGTACGCCACGACCATCCGTGACTCCAAGCGCTGCCGGGAGCGAGACTTCCTGAAGAAAGTCCACGAGA
CCGTGGAGCGTGGTGGGAAGGTGCTGATACCTGTGTTCGCGCTGGGCCGCGCCCAGGAGCTCTGCATCCT
CCTGGAGACCTTCTGGGAGCGCATGAACCTGAAGGTGCCCATCTACTTCTCCACGGGGCTGACCGAGAAG
GCCAACCACTACTACAAGCTGTTCATCCCCTGGACCAACCAGAAGATCCGCAAGACTTTCGTGCAGAGGA
ACATGTTTGAGTTCAAGCACATCAAGGCCTTCGACCGGGCTTTTGCTGACAACCCAGGACCGATGGTTGT
GTTTGCCACGCCAGGAATGCTGCACGCTGGGCAGTCCCTGCAGATCTTCCGGAAATGGGCCGGAAACGAA
AAGAACATGGTCATCATGCCCGGCTACTGCGTGCAGGGCACCGTCGGCCACAAGATCCTCAGCGGGCAGC
GGAAGCTCGAGATGGAGGGGCGGCAGGTGCTGGAGGTCAAGATGCAGGTGGAGTACATGTCATTCAGCGC
ACACGCGGACGCCAAGGGCATCATGCAGCTGGTGGGCCAGGCAGAGCCGGAGAGCGTGCTGCTGGTGCAT
GGCGAGGCCAAGAAGATGGAGTTCCTGAAGCAGAAGATCGAGCAGGAGCTCCGGGTCAACTGCTACATGC
CGGCCAATGGCGAGACGGTGACGCTGCCCACAAGCCCCAGCATCCCCGTAGGCATCTCGCTGGGGCTGCT
GAAGCGGGAGATGGCGCAGGGGCTGCTCCCTGAGGCCAAGAAGCCTCGGCTCCTGCACGGCACCCTGATC
ATGAAGGACAGCAACTTCCGGCTGGTGTCCTCAGAGCAAGCCCTCAAAGAGCTGGGTCTGGCTGAGCACC
AGCTGCGCTTCACCTGCCGCGTGCACCTGCATGACACACGCAAGGAGCAGGAGACGGCATTGCGCGTCTA
CAGCCACCTCAAGAGCGTCCTGAAGGACCACTGTGTGCAGCACCTCCCAGACGGCTCTGTGACTGTGGAG
TCCGTCCTCCTCCAGGCCGCCGCCCCTTCTGAGGACCCAGGCACCAAGGTGCTGCTGGTCTCCTGGACCT
ACCAGGACGAGGAGCTGGGGAGCTTCCTCACATCTCTGCTGAAGAAGGGCCTCCCCCAGGCCCCCAGCTG
A

Translation (606 aa):
MCGAGFGHFEWLAGGGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCV
IISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVV
AVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITES
TYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEK
ANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNE
KNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVH
GEAKKMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPEAKKPRLLHGTLI
MKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDGSVTVE
SVLLQAAAPSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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