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Report for CCDS57971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57971.1 Public Homo sapiens 1 CA6 24 110 108 CCDS HistoryNCBI Gene:765Re-query CCDS DB by CCDS ID:57971.1Re-query CCDS DB by GeneID:765See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 57971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377442.3 ENSP00000366661.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377442.3Link to Ensembl Protein Viewer:ENSP00000366661.2Re-query CCDS DB by Nucleotide ID:ENST00000377442Re-query CCDS DB by Protein ID:ENSP00000366661
Original member Current member NCBI NM_001270501.2 NP_001257430.1 Accepted alive Link to Nucleotide Sequence:NM_001270501.2Link to Protein Sequence:NP_001257430.1Re-query CCDS DB by Nucleotide ID:NM_001270501Re-query CCDS DB by Protein ID:NP_001257430Link to BLAST:NP_001257430.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257430.1 248 P23280-3 248 100% 0 0

Chromosomal Locations for CCDS 57971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 8945887 8945965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8957137 8957285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8958910 8959002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8962587 8962656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8967659 8967816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8970867 8970981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8974622 8974704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGAGGGCCCTGGTGCTTCTGCTGTCCCTGTTCCTGCTGGGTGGCCAGGCCCAGCATGTGTCTGACTGGA
CCTACTCAGTGCAGATCAGCCTGCCCTCCACCATGCGCATGACAGTGGCTGACGGCACTGTATACATAGC
CCAGCAGATGCACTTTCACTGGGGAGGTGCGTCCTCGGAGATCAGCGGCTCTGAGCACACCGTGGACGGG
ATCAGACATGTGATCGAGATTCACATTGTTCACTACAATTCTAAATACAAGAGCTATGATATAGCCCAAG
ATGCGCCGGATGGTTTGGCTGTACTGGCAGCCTTCGTTGAGGTGAAGAATTACCCTGAAAACACTTATTA
CAGCAACTTCATTTCTCATCTGGCCAACATCAAGTACCCAGGACAAAGAACAACCCTGACTGGCCTTGAC
GTTCAGGACATGCTGCCCAGGAACCTCCAGCACTACTACACCTACCATGGCTCACTCACCACGCCTCCCT
GCACTGAGAACGTCCACTGGTTTGTGCTGGCAGATTTTGTCAAGCTCTCCAGGACACAGGTTTGGAAGCT
GGAGAATTCCTTACTGGATCACCGCAACAAGACCATCCACAACGATTACCGCAGGACCCAGCCCCTGAAC
CACAGAGTGGTGGAATCCAACTTCCCGAATCAGGAATACACTCTAGGCTCTGAATTCCAGTTTTACCTAC
ATAAGATTGAGGAAATTCTTGACTACTTAAGAAGAGCATTGAACTGA

Translation (248 aa):
MRALVLLLSLFLLGGQAQHVSDWTYSVQISLPSTMRMTVADGTVYIAQQMHFHWGGASSEISGSEHTVDG
IRHVIEIHIVHYNSKYKSYDIAQDAPDGLAVLAAFVEVKNYPENTYYSNFISHLANIKYPGQRTTLTGLD
VQDMLPRNLQHYYTYHGSLTTPPCTENVHWFVLADFVKLSRTQVWKLENSLLDHRNKTIHNDYRRTQPLN
HRVVESNFPNQEYTLGSEFQFYLHKIEEILDYLRRALN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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