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Report for CCDS58046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58046.1 Public Homo sapiens 1 RABGAP1L 24 110 108 CCDS HistoryNCBI Gene:9910Re-query CCDS DB by CCDS ID:58046.1Re-query CCDS DB by GeneID:9910See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58046.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000489615.5 ENSP00000420660.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000489615.5Link to Ensembl Protein Viewer:ENSP00000420660.1Re-query CCDS DB by Nucleotide ID:ENST00000489615Re-query CCDS DB by Protein ID:ENSP00000420660
Original member Current member NCBI NM_001243765.2 NP_001230694.1 Accepted alive Link to Nucleotide Sequence:NM_001243765.2Link to Protein Sequence:NP_001230694.1Re-query CCDS DB by Nucleotide ID:NM_001243765Re-query CCDS DB by Protein ID:NP_001230694Link to BLAST:NP_001230694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230694.1 370 Q5R372-8 370 100% 0 0

Chromosomal Locations for CCDS 58046.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 174800333 174800500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174811832 174811960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174957457 174957549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174969277 174969387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174976078 174976182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174978807 174978890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174982834 174982905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174988641 174988838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174989849 174990001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGAAGAAGGGGTGCCCTGCCCAGCCCCAGCTGCTAAGCTCACACCTCCTGTCAAAAAGTCCCAGGACA
TGCACGACGAGAGGAGCAAGCTGGTGAATGAGTATGCGTGTCGAGTGCTGGAACTTCTGGGGATGGGGCA
TCGTCTGTTTGTGCCTCGGCTTCTGGCGACCTCAAAGGAAGACCTTCTGCAGGCTGATTTTGAAGGTGCT
TTAAAGTTCTTTAGAGTTCAGCTTCCAAAGAGATACAGGGCAGAGGAAAATGCAAGAAGACTGATGGAGC
AGGCTTGCAATATTAAAGTACCAACCAAGAAGCTGAAGAAATATGAGAAAGAATATCAGACAATGCGAGA
GAGTCAGCTGCAACAGGAAGACCCAATGGATAGATACAAGAGGGAGAACCGAAGATTACAGGAGGCCAGC
ATGAGGTTGGAACAAGAGAATGATGACCTTGCCCATGAACTAGTAACAAGCAAAATTGCTCTACGGAATG
ACTTGGATCAGGCAGAAGACAAGGCAGATGTGTTGAATAAAGAGCTCCTTTTGACCAAACAGAGGCTGGT
GGAGACTGAAGAGGAGAAGAGGAAGCAAGAGGAAGAGACTGCCCAGCTAAAAGAAGTCTTCAGGAAACAG
CTAGAGAAGGCAGAATATGAAATAAAGAAGACTACAGCTATCATTGCTGAGTATAAACAGATCTGTTCGC
AGTTGAGTACCAGGCTGGAGAAACAGCAAGCAGCCAGCAAGGAGGAGCTGGAAGTGGTAAAGGGTAAGAT
GATGGCATGCAAACACTGCAGTGACATTTTCAGCAAGGAGGGTGCTTTGAAACTAGCAGCCACAGGCAGA
GAGGACCAGGGAATTGAAACAGATGATGAGAAGGACTCACTTAAGAAGCAGCTGAGAGAGATGGAACTGG
AACTGGCACAAACCAAACTGCAGTTGGTGGAGGCCAAGTGTAAAATTCAGGAACTTGAACATCAGAGAGG
AGCCCTTATGAATGAAATCCAAGCTGCGAAAAACTCTTGGTTTAGCAAAACCCTGAACTCTATCAAAACG
GCCACGGGCACCCAGCCATTGCAGCCAGCACCGGTCACCCAGCCACCCAAGGAGAGCACATAG

Translation (370 aa):
MEEGVPCPAPAAKLTPPVKKSQDMHDERSKLVNEYACRVLELLGMGHRLFVPRLLATSKEDLLQADFEGA
LKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKRENRRLQEAS
MRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLVETEEEKRKQEEETAQLKEVFRKQ
LEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKMMACKHCSDIFSKEGALKLAATGR
EDQGIETDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELEHQRGALMNEIQAAKNSWFSKTLNSIKT
ATGTQPLQPAPVTQPPKEST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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