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Report for CCDS58049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58049.1 Public Homo sapiens 1 RGSL1 24 110 108 CCDS HistoryNCBI Gene:353299Re-query CCDS DB by CCDS ID:58049.1Re-query CCDS DB by GeneID:353299See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 58049.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294854.13 ENSP00000457748.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294854.13Link to Ensembl Protein Viewer:ENSP00000457748.1Re-query CCDS DB by Nucleotide ID:ENST00000294854Re-query CCDS DB by Protein ID:ENSP00000457748
Original member Current member NCBI NM_001137669.2 NP_001131141.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001137669.2Link to Protein Sequence:NP_001131141.1Re-query CCDS DB by Nucleotide ID:NM_001137669Re-query CCDS DB by Protein ID:NP_001131141Link to BLAST:NP_001131141.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001131141.1 1076 A5PLK6-1 1076 100% 0 0

Chromosomal Locations for CCDS 58049.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 182450166 182450178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182453958 182454040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182458319 182458393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182460004 182460133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182472396 182472557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182473575 182474542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182488285 182488347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182488980 182489202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182493022 182493129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182522004 182522109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182527579 182527772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182530244 182530361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182530790 182530910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182532662 182532791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182540247 182540421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182548317 182548455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182548700 182548824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182551100 182551209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182553455 182553541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182554627 182554693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182556024 182556057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3231 nt):
ATGAGCAGTGCTGAGATAATTGGTTCTACAAATCTTATAATTCTGCTAGAGGATGAAGTCTTTGCCGATT
TTTTCAACACATTTCTTTCCCTCCCGGTTTTTGGTCAGACACCATTTTATACTGTTGAAAATTCACAGTG
GAGCTTGTGGCCAGAAATACCTTGTAACTTGATTGCCAAATACAAAGGGTTATTGACCTGGTTGGAAAAA
TGCCGATTACCTTTCTTCTGTAAAACAAACTTGTGTTTCCATTACATTCTCTGTCAGGAGTTCATCAGTT
TCATTAAGTCCCCAGAAGGAGGTGAAGAATTGGTGGATTTCTGGATCCTTGCTGAGAACATCCTGAGCAT
AGATGAGATGGACCTGGAAGTGAGAGACTACTACCTGTCCCTCCTCCTCATGCTGAGGGCCACTCATCTG
CAGGAGGGCTCCAGGGTGGTAACCCTCTGTAACATGAACATCAAGTCCCTCCTGAACCTCTCCATCTGGC
ATCCCAACCAATCAACCACTAGGAGGGAGATCCTGAGCCACATGCAGAAAGTGGCTCTGTTCAAACTCCA
GAGCTATTGGCTTCCCAACTTTTACACCCACACCAAGATGACCATGGCCAAGGAGGAAGCATGCCATGGT
CTGATGCAAGAGTACGAGACTCGCTTATACAGCGTTTGCTACACCCACATAGGAGGGCTCCCTCTGAACA
TGAGCATCAAGAAGTGCCACCACTTTCAGAAACGGTACTCAAGCAGGAAAGCCAAGAGGAAGATGTGGCA
ATTGGTAGATCCTGACTCTTGGTCTCTGGAAATGGATCTCAAGCCAGATGCTATTGGTATGCCCCTACAG
GAGACATGTCCTCAAGAGAAGGTGGTTATACAAATGCCTTCCCTGAAAATGGCTTCTTCAAAGGAAACAA
GAATCAGTTCCCTGGAAAAGGATATGCATTATGCAAAAATATCCAGCATGGAGAATAAAGCCAAGAGCCA
CCTCCACATGGAAGCCCCCTTTGAGACAAAGGTCTCTACCCACCTGAGGACTGTCATCCCCATTGTCAAT
CACTCCTCCAAGATGACAATTCAGAAGGCCATCAAGCAAAGCTTCTCCTTAGGATACATCCACTTGGCCT
TGTGTGCTGATGCCTGTGCAGGGAACCCTTTCCGGGACCACCTGAAGAAGCTGAATTTGAAAGTGGAGAT
CCAACTTCTTGACCTCTGGCAGGACTTGCAGCATTTCCTCAGTGTCCTTCTGAATAACAAAAAGAATGGG
AATGCAATCTTTCGTCACTTGCTGGGTGACAGAATCTGCGAGCTCTACCTGAATGAGCAGATTGGTCCGT
GCTTACCACTCAAATCCCAAACCATTCAGGGCCTGAAGGAACTATTGCCCTCTGGGGATGTGATCCCCTG
GATTCCCAAAGCCCAGAAGGAGATTTGCAAGATGCTCAGTCCCTGGTATGATGAGTTTCTAGATGAAGAG
GACTACTGGTTTCTCCTTTTTACGACACAGAACAGGTTCATCAGCTCCAGACAGCATAAAAGAGAATTTA
TAGGCAAAGAAGAGAACATTCTTCTTTATAAGAGGATTCAGCAGTCTCTAGAGTTAAGCCAGGCTTTGGC
TGACATGAAGGAAATGGACTATAGGCAGTGGCGAAAGATAGCTACTGAGGACCTGAAGCAAGGAGGCTCT
CTCCAGGTAGAGCTGACATCTCCAGTGTTTCTAACAGACATAACTAAAATGTCCTTTGAGGAGCTTTGCT
ACAAGAACCCAAAGATGGCCATACAGAAGATCAGTGATGACTACAAAATATACTGTGAGAAAGCACCTAA
AATAGATTTTAAAATGGAAATTATCAAGGAAACAAAGACAGTTTCACGCTCAAATAGGAAAATGTCCTTG
CTCAAAAGAACTCTTGTAAGGAAGCCATCAATGAGACCCAGAAACTTGACAGAAGTCCTCTTAAATACAC
AGCACTTGGAGTTCTTCAGGGAGTTCCTCAAGGAACGGAAGGCTAAAATCCCATTGCAATTTCTCACAGC
TGTACAGAAGATCAGTATAGAGACCAATGAAAAGATTTGCAAGTCTCTCATAGAAAATGTAATCAAGACT
TTCTTCCAAGGCCAACTCTCTCCTGAAGAAATGCTGCAGTGTGATGCCCCTATTATCAAAGAAATCGCTT
CCATGCGTCATGTCACCACAAGCACACTGTTAACGCTCCAGGGACATGTTATGAAATCTATAGAAGAAAA
GTGGTTTAAAGATTATCAAGACCTGTTCCCACCTCACCATCAGGAGGTGGAAGTGCAAAGTGAAGTACAA
ATTTCGTCTAGGAAGCCCTCAAAGATAGTGTCAACTTACCTACAGGAATCCCAGAAGAAAGGCTGGATGA
GAATGATCAGCTTTATCAGGAGTTTTTGCAAGTACCGCAGATTTATGTTGAATCCTAGTAAGCGCCAGGA
ATTTGAAGACTATCTTCACCAGGAAATGCAAAATAGCAAGGAAAATTTCACCACAGCACACAACACATCG
GGACGTTCAGCTCCACCCTCCACAAATGTCCGGAGTGCAGACCAAGAGAATGGAGAAATAACCCTTGTAA
AGCGTCGTATATTTGGCCACAGGATTATCACTGTCAACTTTGCGATCAATGATCTATATTTCTTTTCTGA
AATGGAGAAATTTAATGATCTGGTCAGTTCAGCCCACATGCTGCAGGTCAACCGGGCATATAATGAGAAT
GATGTGATCCTAATGCGGTCCAAAATGAACATTATCCAAAAACTCTTCCTGAATTCTGACATCCCTCCAA
AGCTGAGGGTGAATGTCCCTGAGTTCCAGAAGGATGCCATCCTTGCTGCCATCACAGAGGGCTACCTAGA
TCGGAGCGTCTTCCATGGGGCTATCATGTCTGTCTTCCCCGTTGTTATGTACTTCTGGAAAAGGTTTTGT
TTCTGGAAGGCAACCCGCTCTTACTTACAGTATAGGGGGAAGAAGTTCAAGGACAGAAAAAGCCCTCCTA
AATCTACGGACAAGTATCCTTTCTCGAGTGGAGGAGACAATGCCATCTTAAGGTTCACCTTGCTCAGAGG
TATTGAGTGGTTGCAGCCTCAACGGGAAGCAATAAGTTCAGTTCAAAATTCTTCATCAAGCAAACTTACT
CAGCCAAGACTCGTGGTATCTGCCATGCAGCTGCATCCCGTCCAGGGACAAAAATTATCCTACATCAAAA
AAGAGAAGTAA

Translation (1076 aa):
MSSAEIIGSTNLIILLEDEVFADFFNTFLSLPVFGQTPFYTVENSQWSLWPEIPCNLIAKYKGLLTWLEK
CRLPFFCKTNLCFHYILCQEFISFIKSPEGGEELVDFWILAENILSIDEMDLEVRDYYLSLLLMLRATHL
QEGSRVVTLCNMNIKSLLNLSIWHPNQSTTRREILSHMQKVALFKLQSYWLPNFYTHTKMTMAKEEACHG
LMQEYETRLYSVCYTHIGGLPLNMSIKKCHHFQKRYSSRKAKRKMWQLVDPDSWSLEMDLKPDAIGMPLQ
ETCPQEKVVIQMPSLKMASSKETRISSLEKDMHYAKISSMENKAKSHLHMEAPFETKVSTHLRTVIPIVN
HSSKMTIQKAIKQSFSLGYIHLALCADACAGNPFRDHLKKLNLKVEIQLLDLWQDLQHFLSVLLNNKKNG
NAIFRHLLGDRICELYLNEQIGPCLPLKSQTIQGLKELLPSGDVIPWIPKAQKEICKMLSPWYDEFLDEE
DYWFLLFTTQNRFISSRQHKREFIGKEENILLYKRIQQSLELSQALADMKEMDYRQWRKIATEDLKQGGS
LQVELTSPVFLTDITKMSFEELCYKNPKMAIQKISDDYKIYCEKAPKIDFKMEIIKETKTVSRSNRKMSL
LKRTLVRKPSMRPRNLTEVLLNTQHLEFFREFLKERKAKIPLQFLTAVQKISIETNEKICKSLIENVIKT
FFQGQLSPEEMLQCDAPIIKEIASMRHVTTSTLLTLQGHVMKSIEEKWFKDYQDLFPPHHQEVEVQSEVQ
ISSRKPSKIVSTYLQESQKKGWMRMISFIRSFCKYRRFMLNPSKRQEFEDYLHQEMQNSKENFTTAHNTS
GRSAPPSTNVRSADQENGEITLVKRRIFGHRIITVNFAINDLYFFSEMEKFNDLVSSAHMLQVNRAYNEN
DVILMRSKMNIIQKLFLNSDIPPKLRVNVPEFQKDAILAAITEGYLDRSVFHGAIMSVFPVVMYFWKRFC
FWKATRSYLQYRGKKFKDRKSPPKSTDKYPFSSGGDNAILRFTLLRGIEWLQPQREAISSVQNSSSSKLT
QPRLVVSAMQLHPVQGQKLSYIKKEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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