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Report for CCDS58115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58115.1 Public Homo sapiens 11 TRIM3 24 110 108 CCDS HistoryNCBI Gene:10612Re-query CCDS DB by CCDS ID:58115.1Re-query CCDS DB by GeneID:10612See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 58115.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536344.5 ENSP00000445460.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536344.5Link to Ensembl Protein Viewer:ENSP00000445460.1Re-query CCDS DB by Nucleotide ID:ENST00000536344Re-query CCDS DB by Protein ID:ENSP00000445460
Original member Current member NCBI NM_001248007.2 NP_001234936.1 Accepted alive Link to Nucleotide Sequence:NM_001248007.2Link to Protein Sequence:NP_001234936.1Re-query CCDS DB by Nucleotide ID:NM_001248007Re-query CCDS DB by Protein ID:NP_001234936Link to BLAST:NP_001234936.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001234936.1 625 O75382-4 625 100% 0 0

Chromosomal Locations for CCDS 58115.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6449028 6449180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6449306 6449446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6450551 6450621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6450892 6451060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6451271 6451438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6456072 6456175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6456297 6457029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6457296 6457476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6457696 6457847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6458070 6458075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGAAGACGATGGAGTTTTACTGTGAGGCCTGTGAGACGGCCATGTGTGGTGAGTGCCGCGCCGGGGAGC
ATCGTGAGCATGGCACAGTGCTGCTGAGGGATGTGGTGGAGCAGCACAAGGCGGCCCTGCAGCGCCAGCT
CGAGGCTGTGCGTGGCCGATTGCCACAGCTGTCCGCAGCAATTGCCTTAGTCGGGGGCATCAGCCAGCAG
CTGCAGGAGCGCAAGGCAGAGGCCCTGGCCCAGATCAGTGCAGCGTTCGAGGACCTGGAGCAAGCACTGC
AGCAGCGCAAGCAGGCTCTGGTCAGCGACCTGGAGACCATTTGTGGGGCCAAACAGAAGGTGTTGCAAAG
CCAGCTGGACACACTGCGCCAGGGTCAGGAACACATCGGCAGTAGCTGCAGCTTTGCAGAGCAGGCACTG
CGCCTGGGCTCGGCCCCGGAGGTGTTGCTGGTGCGCAAGCACATGCGAGAGCGGCTGGCTGCATTGGCGG
CACAGGCCTTCCCGGAGCGGCCACATGAGAATGCACAGCTGGAACTGGTCCTTGAGGTGGACGGTCTGCG
GCGATCGGTGCTCAATCTGGGCGCACTGCTCACCACGAGCGCCACTGCACACGAAACGGTGGCCACGGGA
GAGGGCCTGCGCCAGGCGCTAGTGGGCCAGCCTGCCTCGCTCACTGTCACTACCAAAGACAAGGACGGGC
GGTTGGTGCGCACAGGCAGCGCTGAGCTGCGTGCAGAGATCACCGGCCCGGACGGCACGCGCCTTCCGGT
GCCAGTGGTGGACCACAAGAATGGCACATATGAGCTAGTGTACACAGCGCGCACGGAAGGCGAGCTGCTC
CTCTCGGTGCTGCTCTACGGACAGCCAGTGCGCGGCAGCCCCTTCCGCGTGCGTGCCCTGCGTCCGGGGG
ACCTGCCACCTTCCCCGGACGATGTGAAGCGCCGTGTCAAGTCCCCTGGCGGCCCCGGCAGCCATGTGCG
CCAGAAGGCAGTGCGTAGGCCCAGCTCCATGTACAGCACAGGCGGCAAACGAAAGGACAACCCAATTGAG
GATGAGCTCGTCTTCCGTGTTGGCAGTCGTGGAAGGGAGAAAGGTGAATTCACCAATTTACAAGGTGTGT
CCGCAGCCAGCAGCGGCCGCATCGTGGTAGCAGACAGCAACAACCAGTGTATTCAGGTTTTCTCCAATGA
GGGCCAGTTCAAGTTCCGTTTTGGGGTCCGAGGACGCTCACCTGGGCAGCTGCAGCGCCCCACAGGTGTG
GCAGTGGACACCAATGGAGACATAATTGTGGCAGACTATGACAACCGTTGGGTCAGCATCTTCTCCCCTG
AGGGCAAGTTCAAGACCAAGATTGGAGCTGGCCGCCTCATGGGCCCCAAGGGAGTGGCCGTAGACCGGAA
TGGACATATCATTGTGGTCGACAACAAGTCTTGCTGCGTCTTTACCTTCCAGCCCAATGGCAAACTGGTT
GGCCGTTTTGGGGGCCGTGGGGCCACTGACCGCCACTTTGCAGGGCCCCATTTTGTGGCTGTGAACAACA
AGAATGAAATTGTAGTAACGGACTTCCATAACCATTCAGTGAAGGTGTACAGTGCCGATGGAGAGTTCCT
CTTCAAGTTTGGCTCCCATGGCGAGGGCAATGGGCAGTTCAATGCCCCCACAGGAGTAGCTGTGGACTCC
AATGGAAACATCATTGTGGCTGACTGGGGCAACAGCCGCATCCAGGTATTCGACAGCTCTGGCTCCTTCC
TGTCCTATATCAACACATCTGCAGAACCACTGTATGGTCCACAGGGCCTGGCACTGACCTCGGATGGCCA
TGTGGTGGTGGCTGATGCTGGCAACCACTGCTTTAAAGCCTATCGCTACCTCCAGTAG

Translation (625 aa):
MKTMEFYCEACETAMCGECRAGEHREHGTVLLRDVVEQHKAALQRQLEAVRGRLPQLSAAIALVGGISQQ
LQERKAEALAQISAAFEDLEQALQQRKQALVSDLETICGAKQKVLQSQLDTLRQGQEHIGSSCSFAEQAL
RLGSAPEVLLVRKHMRERLAALAAQAFPERPHENAQLELVLEVDGLRRSVLNLGALLTTSATAHETVATG
EGLRQALVGQPASLTVTTKDKDGRLVRTGSAELRAEITGPDGTRLPVPVVDHKNGTYELVYTARTEGELL
LSVLLYGQPVRGSPFRVRALRPGDLPPSPDDVKRRVKSPGGPGSHVRQKAVRRPSSMYSTGGKRKDNPIE
DELVFRVGSRGREKGEFTNLQGVSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGV
AVDTNGDIIVADYDNRWVSIFSPEGKFKTKIGAGRLMGPKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLV
GRFGGRGATDRHFAGPHFVAVNNKNEIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDS
NGNIIVADWGNSRIQVFDSSGSFLSYINTSAEPLYGPQGLALTSDGHVVVADAGNHCFKAYRYLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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