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Report for CCDS58156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58156.1 Public Homo sapiens 11 RAB6A 24 110 108 CCDS HistoryNCBI Gene:5870Re-query CCDS DB by CCDS ID:58156.1Re-query CCDS DB by GeneID:5870See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58156.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541588.5 ENSP00000445350.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541588.5Link to Ensembl Protein Viewer:ENSP00000445350.1Re-query CCDS DB by Nucleotide ID:ENST00000541588Re-query CCDS DB by Protein ID:ENSP00000445350
Original member Current member NCBI NM_001243718.2 NP_001230647.1 Accepted alive Link to Nucleotide Sequence:NM_001243718.2Link to Protein Sequence:NP_001230647.1Re-query CCDS DB by Nucleotide ID:NM_001243718Re-query CCDS DB by Protein ID:NP_001230647Link to BLAST:NP_001230647.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230647.1 104 P20340-3 104 100% 0 0

Chromosomal Locations for CCDS 58156.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73677898 73677962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73679654 73679720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73720846 73720899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73730765 73730823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73760566 73760635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (315 nt):
ATGTCCACGGGCGGAGACTTCGGGAATCCGCTGAGGAAATTCAAGCTGGTGTTCCTGGGGGAGCAAAGCG
TTGGAAAGACATCTTTGATCACCAGATTCATGTATGACAGTTTTGACAACACCTATCAGGCAACAATTGG
CATTGACTTTTTATCAAAAACTATGTACTTGGAGGATCGAACACTCTTTCGACGTGTAGCAGCAGCTTTG
CCGGGAATGGAAAGCACACAGGACAGAAGCAGAGAAGATATGATTGACATAAAACTGGAAAAGCCTCAGG
AGCAACCAGTCAGTGAAGGAGGCTGTTCCTGCTAA

Translation (104 aa):
MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTLFRRVAAAL
PGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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