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Report for CCDS58158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58158.1 Public Homo sapiens 11 PAAF1 24 110 108 CCDS HistoryNCBI Gene:80227Re-query CCDS DB by CCDS ID:58158.1Re-query CCDS DB by GeneID:80227See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58158.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535604.5 ENSP00000438789.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535604.5Link to Ensembl Protein Viewer:ENSP00000438789.1Re-query CCDS DB by Nucleotide ID:ENST00000535604Re-query CCDS DB by Protein ID:ENSP00000438789
Original member Current member EBI ENST00000541951.5 ENSP00000441333.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541951.5Link to Ensembl Protein Viewer:ENSP00000441333.1Re-query CCDS DB by Nucleotide ID:ENST00000541951Re-query CCDS DB by Protein ID:ENSP00000441333
Original member Current member NCBI NM_001267806.2 NP_001254735.1 Accepted alive Link to Nucleotide Sequence:NM_001267806.2Link to Protein Sequence:NP_001254735.1Re-query CCDS DB by Nucleotide ID:NM_001267806Re-query CCDS DB by Protein ID:NP_001254735Link to BLAST:NP_001254735.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254735.1 277 Q9BRP4-3 277 100% 0 0

Chromosomal Locations for CCDS 58158.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73899209 73899244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73900270 73900420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73909399 73909593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73914413 73914504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73916545 73916660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73918950 73919032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73924615 73924697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73927285 73927362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGAAAATCTGGCAGGCTTCCAATGGAGAACTCAGGAGAGTATTGGAAGGACATGTGTTTGATGTGAATT
GTTGCAGGTTTTTCCCATCAGGCCTTGTGGTCCTGAGTGGGGGAATGGATGCCCAGCTGAAGATATGGTC
AGCTGAAGATGCTAGCTGCGTGGTGACCTTCAAAGGTCACAAAGGAGGTATCCTGGATACAGCCATCGTT
GATCGGGGGAGGAATGTGGTGTCTGCTTCTCGAGATGGGACAGCACGACTTTGGGATTGTGGGCGCTCAG
CCTGCTTGGGAGTCCTTGCAGATTGTGGTTCTTCTATCAATGGAGTGGCGGTGGGTGCTGCTGACAACTC
CATAAACCTTGGCTCCCCTGAGCAGATGCCCAGTGAACGGGAGGTTGGAACAGAGGCCAAAATGCTGCTC
TTGGCCCGGGAAGATAAGAAACTTCAGTGCTTGGGACTACAGAGCAGGCAGCTGGTGTTCCTCTTTATTG
GCTCAGACGCTTTCAACTGCTGTACTTTTCTCTCTGGCTTCTTGCTATTGGCTGGGACTCAAGATGGAAA
CATTTATCAGCTGGATGTGAGGAGTCCAAGGGCTCCGGTACAAGTCATCCACAGATCAGGAGCACCAGTT
CTATCCCTGCTAAGTGTCAGAGATGGATTCATTGCTAGCCAAGGTGATGGAAGCTGTTTTATTGTCCAGC
AAGACTTAGACTATGTCACTGAGCTCACTGGGGCTGACTGTGACCCTGTGTACAAGGTAGCCACATGGGA
GAAGCAGATCTACACATGCTGTCGAGACGGTCTTGTACGACGCTACCAGCTTTCTGACCTCTGA

Translation (277 aa):
MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIV
DRGRNVVSASRDGTARLWDCGRSACLGVLADCGSSINGVAVGAADNSINLGSPEQMPSEREVGTEAKMLL
LAREDKKLQCLGLQSRQLVFLFIGSDAFNCCTFLSGFLLLAGTQDGNIYQLDVRSPRAPVQVIHRSGAPV
LSLLSVRDGFIASQGDGSCFIVQQDLDYVTELTGADCDPVYKVATWEKQIYTCCRDGLVRRYQLSDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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