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Report for CCDS58160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58160.1 Public Homo sapiens 11 XRRA1 24 110 108 CCDS HistoryNCBI Gene:143570Re-query CCDS DB by CCDS ID:58160.1Re-query CCDS DB by GeneID:143570See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58160.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000527087.5 ENSP00000435838.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527087.5Link to Ensembl Protein Viewer:ENSP00000435838.1Re-query CCDS DB by Nucleotide ID:ENST00000527087Re-query CCDS DB by Protein ID:ENSP00000435838
Original member Current member NCBI NM_001270380.3 NP_001257309.1 Accepted alive Link to Nucleotide Sequence:NM_001270380.3Link to Protein Sequence:NP_001257309.1Re-query CCDS DB by Nucleotide ID:NM_001270380Re-query CCDS DB by Protein ID:NP_001257309Link to BLAST:NP_001257309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257309.1 598 Q6P2D8-2 598 100% 0 0

Chromosomal Locations for CCDS 58160.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74843415 74843453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74844168 74844283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74845073 74845271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74848115 74848462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74851088 74851203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74906239 74906456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74907145 74907273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74921214 74921347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74927391 74927488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74930300 74930372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74933825 74933872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74936884 74937068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74940785 74940878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGGCCTTCTCAGGAATCTACAAGCTGGATGATGGGAAGCCTTACCTGAACAACTGCTTCCCAGCCAGAA
ATCTGCTTCGCGTGCCGGAGGAAGGCCAAGGACACTGGTTAGTGGTTCAGAAAGGTAACCTCAAGAAGAA
GCCCAAGGGTTTGGTTGGAGCACAAGCTGAACGTCGGGAAAGCCTGAAGGCGACTTCTTTTGAGTTCAAG
GGGAAGAAAGAGTCTCGGCGGGAAAATCAGGTGGACCTTCCTGGACATATCCTGGACCAGGCTTTTCTGC
TGAAGCACCACTGTGTGAGGAAGCCATCAGATCTGTGCACCATTAATGCCAAGGAAAATGACTTCAAGCA
TTTTCATTCTGTGATTTATATCAATGCCTCAGAAAACCTGCTGCCTCTAGAGGCATTTCACACGTTTCCA
GCCCTAAAGGAACTGGATCTCGCATTTAATGGCATCAAAACTATCTACGTGAAATATGGAGACTTTAAGT
TATTAGAATTCTTGGACCTTTCCTTCAACAGCCTGACTGTGGAGGCCATCTGTGATTTGGGGATTCTGCC
ACACCTCCGTGTCCTGCTCCTCACAGGCAATGGCCTTACCTCCCTGCCGCCCAATTTGGCCGTCGCAGAA
CAGGAGGCATCTGTAACATCGCTGACAAGCAAGAGGTACATCCTGAGGTTCCCAGCGCTGGAGACACTGA
TGCTGGATGACAACAGACTCTCCAACCCCAGTTGCTTTGCCAGCCTGGCTGGGCTCAGGAGACTGAAGAA
GTTAAGCTTGGATGAAAACAGGATTATCAGGATCCCATACCTACAGCAAGTTCAGCTCTATGACGAGTCA
GTAGACTGGAATGGAGGCAGGGGAAGTCCCCATAAAGAGCCCCAATTCATGCTGCAGTCCAAGCCAAGGA
TGCTTGAGGACTCAGATGAGCAACTGGATTATACTGTACTGCCCATGAAAAAGGATGTTGACCGGACAGG
GGTCCCTCCACTGCTGAAGAGCTTCCTCCAGGAGCGACTGGGAATCCACTTAATTCGAAGGAAGATAGTA
AAGCCTAAGCATCATGTTTTGATGTCTCGGAAGGAATCATGGAAGGTGAAAAGCGAAATCCCAAAGGTGC
CGAAGCAGCCTCTGGTGCTCCATCACCCGCGCATGACGACAACCAAGTCTCCCTCAAAGGATATGCTAGA
GCCAGAGGCAGAGCTGGCTGAAGATCTGCCCACTACCAAAAGCACTTCTGTGGAGTCAGAGATGCCCACT
GAGAACCTGGAAGGCCATTCCCCGTCTTGCCGGACCTTCGTGCCACTGCCTCCCATCTGCTCCAACTCCA
CTGTGCATAGTGAAGAGACCCTGTCCCACCTGAGTGACACAACTGTCCGCCTCAGCCCAGAGCGCCCATC
AGATGAGGACTCCAAGAGCACAGAGTCCATCTTCCTGACCCAGGTGAGTGAACTGCCTTCCTCCGTCATC
CATAAGGATGATTTAGAGTTAAAGGAGAAAGACCAAAAGAAACCACCAACGGCACCCAGAGAGGTGAAAG
GGACTCGGAGGAAACTCCCAACTGCCTTCCTTCCCAGCAAGTACCACGGCTATGAAGAACTGCTGACAGC
CAAGCCTGATCCAGCCTTCATTGAGCCAAAGGGAATCCAGAAGAATGCACAAGCCCTGCAACAAATGCTG
AAGCACCCACTCCTGTGCCACTCCTCCAAGCCCAAGCTGGACACTCTTCAGAAACCCTATGTTCACAAAG
AGAAACGGGTGCTGTCCTGCACCAGTGGACAGAACGGCGGCTGGTGA

Translation (598 aa):
MAFSGIYKLDDGKPYLNNCFPARNLLRVPEEGQGHWLVVQKGNLKKKPKGLVGAQAERRESLKATSFEFK
GKKESRRENQVDLPGHILDQAFLLKHHCVRKPSDLCTINAKENDFKHFHSVIYINASENLLPLEAFHTFP
ALKELDLAFNGIKTIYVKYGDFKLLEFLDLSFNSLTVEAICDLGILPHLRVLLLTGNGLTSLPPNLAVAE
QEASVTSLTSKRYILRFPALETLMLDDNRLSNPSCFASLAGLRRLKKLSLDENRIIRIPYLQQVQLYDES
VDWNGGRGSPHKEPQFMLQSKPRMLEDSDEQLDYTVLPMKKDVDRTGVPPLLKSFLQERLGIHLIRRKIV
KPKHHVLMSRKESWKVKSEIPKVPKQPLVLHHPRMTTTKSPSKDMLEPEAELAEDLPTTKSTSVESEMPT
ENLEGHSPSCRTFVPLPPICSNSTVHSEETLSHLSDTTVRLSPERPSDEDSKSTESIFLTQVSELPSSVI
HKDDLELKEKDQKKPPTAPREVKGTRRKLPTAFLPSKYHGYEELLTAKPDPAFIEPKGIQKNAQALQQML
KHPLLCHSSKPKLDTLQKPYVHKEKRVLSCTSGQNGGW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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