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Report for CCDS58173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58173.1 Public Homo sapiens 11 RDX 24 110 108 CCDS HistoryNCBI Gene:5962Re-query CCDS DB by CCDS ID:58173.1Re-query CCDS DB by GeneID:5962See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58173.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530301.5 ENSP00000436277.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530301.5Link to Ensembl Protein Viewer:ENSP00000436277.1Re-query CCDS DB by Nucleotide ID:ENST00000530301Re-query CCDS DB by Protein ID:ENSP00000436277
Original member Current member NCBI NM_001260496.2 NP_001247425.1 Accepted alive Link to Nucleotide Sequence:NM_001260496.2Link to Protein Sequence:NP_001247425.1Re-query CCDS DB by Nucleotide ID:NM_001260496Re-query CCDS DB by Protein ID:NP_001247425Link to BLAST:NP_001247425.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001247425.1 200 P35241-3 200 100% 0 0

Chromosomal Locations for CCDS 58173.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 110199612 110199678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110231873 110232004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110258157 110258189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110263960 110264234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110272536 110272619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110279681 110279692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGCCGAAACCAATCAACGTAAGAGTAACTACAATGGATGCTGAGCTGGAATTTGCCATTCAGCCCAATA
CAACTGGCAAACAACTTTTTGACCAGGTAACACAGCAGGATGTTAAAAAAGAGAATCCTTTACAGTTCAA
GTTTAGAGCTAAATTCTTTCCTGAAGATGTTTCTGAGGAATTAATTCAAGAAATAACCCAGAGACTCTTC
TTCTTGCAAGTTAAAGAAGCCATCTTAAATGATGAGATATATTGCCCGCCAGAAACTGCAGTTCTTTTGG
CTTCCTATGCTGTCCAAGCCAAGTATGGAGATTACAATAAAGAGATTCATAAGCCAGGCTACCTGGCTAA
TGATAGACTCCTACCCCAGCGTGTATTGGAACAACACAAACTAACAAAAGAACAAGATGAAACCAAGAAA
ACACAAAATGATGTTCTTCATGCTGAGAATGTTAAAGCAGGCCGTGATAAGTACAAGACTCTGCGACAGA
TTCGACAAGGCAATACAAAGCAGCGTATCGATGAGTTTGAAGCAATGTGGGGACCCAAACTGTATGCATT
GTTCCAGATGCGCTCTTGCCAAAGCAGCATAAAGCAAATGTAA

Translation (200 aa):
MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVTQQDVKKENPLQFKFRAKFFPEDVSEELIQEITQRLF
FLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQDETKK
TQNDVLHAENVKAGRDKYKTLRQIRQGNTKQRIDEFEAMWGPKLYALFQMRSCQSSIKQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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