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Report for CCDS58241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58241.1 Public Homo sapiens 12 OR2AP1 24 110 108 CCDS HistoryNCBI Gene:121129Re-query CCDS DB by CCDS ID:58241.1Re-query CCDS DB by GeneID:121129See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58241.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641114.1 ENSP00000493043.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641114.1Link to Ensembl Protein Viewer:ENSP00000493043.1Re-query CCDS DB by Nucleotide ID:ENST00000641114Re-query CCDS DB by Protein ID:ENSP00000493043
Original member Current member NCBI NM_001258285.2 NP_001245214.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001258285.2Link to Protein Sequence:NP_001245214.1Re-query CCDS DB by Nucleotide ID:NM_001258285Re-query CCDS DB by Protein ID:NP_001245214Link to BLAST:NP_001245214.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245214.1 309 Q8NGE2 309 100% 0 0

Chromosomal Locations for CCDS 58241.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55574415 55575344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGAAAAATAAAACCGTGTTAACTGAGTTTATCCTTCTGGGTCTAACAGATGTCCCTGAACTCCAGGTGG
CAGTTTTCACCTTTCTTTTCCTTGCGTATTTACTCAGCATCCTTGGAAATCTGACTATCCTCATCCTCAC
CTTGCTGGACTCCCACCTTCAGACTCCCATGTATTTCTTTCTCCGGAACTTCTCCTTCTTGGAAATTTCC
TTCACAAACATCTTCATTCCAAGGGTCCTGATTAGCATCACAACAGGGAACAAGAGTATCAGCTTTGCTG
GCTGCTTCACTCAGTATTTCTTTGCCATGTTCCTTGGGGCTACAGAGTTTTACCTTCTGGCTGCCATGTC
CTATGACCGCTATGTGGCCATCTGCAAACCTCTGCATTACACCACCATCATGAGCAGCAGAATCTGCATC
CAGCTGATTTTCTGCTCTTGGCTGGGTGGGCTAATGGCTATTATACCAACAATCACCCTGATGAGTCAGC
AGGACTTTTGTGCATCCAACAGACTGAATCATTACTTCTGTGACTATGAGCCTCTTCTGGAACTCTCATG
TTCAGACACAAGCCTCATAGAGAAGGTTGTCTTTCTTGTGGCATCTGTGACCCTGGTGGTCACTCTGGTG
CTAGTGATTCTCTCCTATGCATTCATTATCAAGACTATTCTGAAGCTCCCCTCTGCCCAACAAAGGACAA
AAGCCTTTTCCACATGTTCTTCCCACATGATTGTCATCTCCCTCTCTTACGGAAGCTGCATGTTTATGTA
CATTAATCCCTCTGCAAAAGAAGGGGATACATTCAACAAGGGAGTAGCTCTACTCATTACTTCAGTTGCT
CCTTTGTTGAACCCCTTTATTTACACCCTAAGGAACCAACAGGTAAAACAACCCTTCAAGGATATGGTCA
AAAAGCTTCTGAATCTTTAA

Translation (309 aa):
MKNKTVLTEFILLGLTDVPELQVAVFTFLFLAYLLSILGNLTILILTLLDSHLQTPMYFFLRNFSFLEIS
FTNIFIPRVLISITTGNKSISFAGCFTQYFFAMFLGATEFYLLAAMSYDRYVAICKPLHYTTIMSSRICI
QLIFCSWLGGLMAIIPTITLMSQQDFCASNRLNHYFCDYEPLLELSCSDTSLIEKVVFLVASVTLVVTLV
LVILSYAFIIKTILKLPSAQQRTKAFSTCSSHMIVISLSYGSCMFMYINPSAKEGDTFNKGVALLITSVA
PLLNPFIYTLRNQQVKQPFKDMVKKLLNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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