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Report for CCDS58277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58277.1 Public Homo sapiens 12 UBE3B 24 110 108 CCDS HistoryNCBI Gene:89910Re-query CCDS DB by CCDS ID:58277.1Re-query CCDS DB by GeneID:89910See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58277.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340074.9 ENSP00000342614.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340074.9Link to Ensembl Protein Viewer:ENSP00000342614.5Re-query CCDS DB by Nucleotide ID:ENST00000340074Re-query CCDS DB by Protein ID:ENSP00000342614
Original member Current member EBI ENST00000536398.5 ENSP00000440585.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536398.5Link to Ensembl Protein Viewer:ENSP00000440585.1Re-query CCDS DB by Nucleotide ID:ENST00000536398Re-query CCDS DB by Protein ID:ENSP00000440585
Original member Current member EBI ENST00000540230.5 ENSP00000443565.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540230.5Link to Ensembl Protein Viewer:ENSP00000443565.1Re-query CCDS DB by Nucleotide ID:ENST00000540230Re-query CCDS DB by Protein ID:ENSP00000443565
Original member Current member NCBI NM_001270449.2 NP_001257378.1 Accepted alive Link to Nucleotide Sequence:NM_001270449.2Link to Protein Sequence:NP_001257378.1Re-query CCDS DB by Nucleotide ID:NM_001270449Re-query CCDS DB by Protein ID:NP_001257378Link to BLAST:NP_001257378.1
Original member Current member NCBI NM_001270450.2 NP_001257379.1 Accepted alive Link to Nucleotide Sequence:NM_001270450.2Link to Protein Sequence:NP_001257379.1Re-query CCDS DB by Nucleotide ID:NM_001270450Re-query CCDS DB by Protein ID:NP_001257379Link to BLAST:NP_001257379.1
Original member Current member NCBI NM_001270451.2 NP_001257380.1 Accepted alive Link to Nucleotide Sequence:NM_001270451.2Link to Protein Sequence:NP_001257380.1Re-query CCDS DB by Nucleotide ID:NM_001270451Re-query CCDS DB by Protein ID:NP_001257380Link to BLAST:NP_001257380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257378.1 244 Q7Z3V4-3 244 100% 0 0
NP_001257379.1 244 Q7Z3V4-3 244 100% 0 0
NP_001257380.1 244 Q7Z3V4-3 244 100% 0 0

Chromosomal Locations for CCDS 58277.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 109483552 109483712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109483861 109483981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109486012 109486071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109486471 109486575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109488572 109488668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109489919 109490004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109490490 109490594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGTTCACCCTGTCTCAGACCTCGAGAGCATGGTTCATCGATAGAGCCCGTCAGGCACGAGAAGAAAGGC
TTGTGCAGAAGGAACGGGAGCGGGCAGCTGTTGTGATCCAGGCCCATGTCCGGAGTTTTCTCTGTCGGAG
TCGACTGCAGAGAGATATCAGGAGAGAGATTGATGACTTTTTTAAAGCAGATGACCCTGAGTCCACTAAA
AGAAGTGCACTTTGTATTTTCAAGATTGCCAGGAAACTGCTGTTCCTATTCAGAATCAAAGAGGATAATG
AGAGATTTGAGAAGTTGTGTCGCAGCATCCTGAGCAGCATGGATGCTGAGAATGAGCCTAAGGTGTGGTA
TGTGTCCCTGGCTTGTTCTAAGGACCTCACCCTCCTTTGGATTCAACAGATCAAGAACATTTTGTGGTAC
TGCTGTGATTTTCTCAAGCAGCTCAAGCCTGAAATCCTGCAGGACTCCCGACTCATCACCCTGTACCTCA
CGATGCTTGTCACCTTCACAGACACTTCAACGTGGAAAATTCTTCGGGGAAAAGGTGAAAGTCTTCGACC
AGCGATGAACCACATTTGTGCAAATATAATGGGACATCTCAACCAGCATGGATTTTATTCTGTGCTGCAG
TGCTGTGATGGGCTGTTTCCTGATTTGGTTTCATATGCTCCTCACAACAACCCTGTGAGGTGGTCCGTTG
GCAGAAGCTGGTATGACTGGCAGTTGTCTCGCTAG

Translation (244 aa):
MFTLSQTSRAWFIDRARQAREERLVQKERERAAVVIQAHVRSFLCRSRLQRDIRREIDDFFKADDPESTK
RSALCIFKIARKLLFLFRIKEDNERFEKLCRSILSSMDAENEPKVWYVSLACSKDLTLLWIQQIKNILWY
CCDFLKQLKPEILQDSRLITLYLTMLVTFTDTSTWKILRGKGESLRPAMNHICANIMGHLNQHGFYSVLQ
CCDGLFPDLVSYAPHNNPVRWSVGRSWYDWQLSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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