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Report for CCDS58339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58339.1 Public Homo sapiens 14 PACS2 24 110 108 CCDS HistoryNCBI Gene:23241Re-query CCDS DB by CCDS ID:58339.1Re-query CCDS DB by GeneID:23241See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58339.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430725.6 ENSP00000393524.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430725.6Link to Ensembl Protein Viewer:ENSP00000393524.2Re-query CCDS DB by Nucleotide ID:ENST00000430725Re-query CCDS DB by Protein ID:ENSP00000393524
Original member Current member NCBI NM_001243127.3 NP_001230056.1 Accepted alive Link to Nucleotide Sequence:NM_001243127.3Link to Protein Sequence:NP_001230056.1Re-query CCDS DB by Nucleotide ID:NM_001243127Re-query CCDS DB by Protein ID:NP_001230056Link to BLAST:NP_001230056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230056.1 814 Q86VP3-4 814 100% 0 0

Chromosomal Locations for CCDS 58339.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 105348575 105348580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105352378 105352467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105355052 105355177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105367213 105367375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105368074 105368147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105368459 105368515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105369841 105369900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105376768 105376925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105379739 105379829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105380080 105380154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105380957 105381099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105381914 105382046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105382477 105382581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105382807 105382913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105383359 105383513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105384353 105384463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105384879 105384987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105389961 105390003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105391207 105391249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105391631 105391766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105392619 105392845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105393222 105393335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105394554 105394672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2445 nt):
ATGCAGGGCTCCAAACGAATCCTGCGGTCCCATGAGATTGTGCTGCCCCCCAGTGGACAAGTGGAGACAG
ACCTGGCCCTGACCTTCTCCTTGCAGTATCCTCACTTCTTGAAGAGGGAAGGCAACAAGCTTCAGATCAT
GCTGCAGCGCAGAAAGCGCTACAAGAACAGAACCATCCTGGGCTACAAGACGCTGGCCGCGGGCTCCATC
AGCATGGCTGAGGTGATGCAACACCCGTCTGAAGGTGGCCAGGTGCTGAGCCTCTGCAGCAGCATCAAGG
AGGCCCCCGTCAAGGCGGCCGAGATCTGGATCGCCTCCCTGTCCAGCCAGCCCATTGACCACGAAGACAG
CACCATGCAGGCCGGCCCCAAGGCCAAGTCCACGGATAACTACTCCGAGGAGGAGTATGAGAGCTTCTCC
TCCGAGCAGGAGGCCAGTGACGACGCCGTGCAGGGGCAGGACTTGGACGAGGACGACTTTGACGTGGGGA
AGCCGAAGAAGCAGCGGAGATCGATTCAACAGAACTTCAAGCAGAAAGTGGTAGCGCTGCTGCGGAGGTT
CAAAGTGTCCGACGAGGTCCTGGACTCGGAGCAGGACCCTGCGGAGCACATCCCCGAGGCAGAGGAGGAC
CTGGACCTCCTGTATGACACCCTGGACATGGAGCACCCCAGCGACAGCGGCCCCGACATGGAGGATGACG
ACAGCGTCCTCAGCACCCCCAAGCCGAAGCTGCGGCCATACTTTGAAGGCCTGTCGCACTCGAGCTCGCA
GACGGAGATTGGGAGCATCCACAGCGCCCGCAGCCACAAGGAGCCCCCAAGCCCGGCTGACGTGCCCGAG
AAGACGCGGTCCCTGGGAGGCAGGCAGCCGAGCGACAGTGTCTCTGACACGGTGGCCCTCGGTGTGCCAG
GCCCGAGGGAGCACCCTGGACAGCCTGAGGACAGCCCCGAGGCTGAGGCCTCCACCCTGGATGTGTTCAC
GGAGAGGCTGCCGCCCAGCGGGAGGATCACCAAGACAGAGTCCCTTGTCATCCCCTCCACCAGGTCCGAG
GGGAAGCAGGCTGGCCGACGGGGCCGGAGCACATCCTTGAAGGAGCGGCAGGCAGCACGGCCCCAGAATG
AGCGGGCCAACAGCCTGGACAACGAGCGCTGCCCGGACGCCCGGAGCCAGCTACAGATCCCCAGGAAGAC
TGTGTATGACCAGCTCAACCACATCCTCATCTCCGATGACCAGCTTCCCGAAAACATCATCCTTGTCAAC
ACCTCGGACTGGCAGGGGCAGTTCCTCTCCGACGTCCTGCAGAGGCACACGCTCCCCGTGGTGTGCACGT
GCTCTCCTGCGGACGTCCAGGCGGCCTTCAGCACCATCGTCTCACGGATACAGAGATACTGCAACTGCAA
TTCCCAGCCCCCGACCCCCGTGAAGATCGCCGTGGCGGGAGCGCAGCATTACCTCAGTGCCATCCTGCGG
CTCTTTGTGGAGCAGCTGTCCCACAAGACACCCGACTGGCTCGGCTACATGCGCTTCCTGGTCATCCCAC
TGGGCTCCCACCCCGTGGCCAGGTACCTAGGCTCCGTGGACTACCGCTACAACAACTTCTTCCAGGACCT
GGCCTGGAGAGACCTGTTCAACAAGCTGGAGGCCCAGAGTGCGGTACAGGACACGCCAGACATTGTGTCA
CGCATCACGCAGTACATCGCAGGGGCCAACTGTGCCCACCAGCTCCCCATCGCAGAGGCCATGCTGACCT
ACAAGCAGAAGAGCCCTGACGAAGAGTCCTCCCAAAAGTTCATTCCCTTTGTCGGGGTTGTGAAGGTTGG
AATTGTGGAGCCATCCTCGGCCACATCAGGCGACTCGGACGACGCGGCCCCCTCGGGCTCTGGCACGCTC
TCCTCCACCCCGCCGTCCGCATCTCCTGCGGCCAAGGAGGCCTCACCCACCCCGCCCTCCTCCCCGTCGG
TGAGCGGAGGCCTGTCCTCCCCCAGCCAGGGTGTCGGCGCCGAGCTGATGGGGCTGCAGGTGGACTACTG
GACGGCAGCACAGCCTGCGGACAGGAAGAGGGACGCCGAGAAGAAGGACCTGCCTGTCACCAAAAACACG
CTCAAGTGCACTTTCCGGTCCCTCCAGGTCAGCAGGCTGCCCAGCAGCGGCGAGGCTGCAGCCACGCCCA
CCATGTCCATGACCGTGGTCACCAAGGAGAAGAACAAGAAGGTGATGTTTCTGCCCAAGAAAGCGAAGGA
CAAGGACGTGGAGTCTAAGAGCCAGTGCATTGAGGGCATCAGCCGGCTCATCTGCACTGCCAGGCAGCAG
CAGAACATGCTGCGGGTCCTCATCGACGGCGTGGAGTGCAGCGACGTCAAGTTCTTCCAGCTGGCCGCGC
AGTGGTCCTCGCACGTGAAGCACTTCCCCATCTGCATCTTCGGACACTCCAAGGCCACCTTCTAG

Translation (814 aa):
MQGSKRILRSHEIVLPPSGQVETDLALTFSLQYPHFLKREGNKLQIMLQRRKRYKNRTILGYKTLAAGSI
SMAEVMQHPSEGGQVLSLCSSIKEAPVKAAEIWIASLSSQPIDHEDSTMQAGPKAKSTDNYSEEEYESFS
SEQEASDDAVQGQDLDEDDFDVGKPKKQRRSIQQNFKQKVVALLRRFKVSDEVLDSEQDPAEHIPEAEED
LDLLYDTLDMEHPSDSGPDMEDDDSVLSTPKPKLRPYFEGLSHSSSQTEIGSIHSARSHKEPPSPADVPE
KTRSLGGRQPSDSVSDTVALGVPGPREHPGQPEDSPEAEASTLDVFTERLPPSGRITKTESLVIPSTRSE
GKQAGRRGRSTSLKERQAARPQNERANSLDNERCPDARSQLQIPRKTVYDQLNHILISDDQLPENIILVN
TSDWQGQFLSDVLQRHTLPVVCTCSPADVQAAFSTIVSRIQRYCNCNSQPPTPVKIAVAGAQHYLSAILR
LFVEQLSHKTPDWLGYMRFLVIPLGSHPVARYLGSVDYRYNNFFQDLAWRDLFNKLEAQSAVQDTPDIVS
RITQYIAGANCAHQLPIAEAMLTYKQKSPDEESSQKFIPFVGVVKVGIVEPSSATSGDSDDAAPSGSGTL
SSTPPSASPAAKEASPTPPSSPSVSGGLSSPSQGVGAELMGLQVDYWTAAQPADRKRDAEKKDLPVTKNT
LKCTFRSLQVSRLPSSGEAAATPTMSMTVVTKEKNKKVMFLPKKAKDKDVESKSQCIEGISRLICTARQQ
QNMLRVLIDGVECSDVKFFQLAAQWSSHVKHFPICIFGHSKATF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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