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Report for CCDS58379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58379.1 Public Homo sapiens 15 NPTN 24 110 108 CCDS HistoryNCBI Gene:27020Re-query CCDS DB by CCDS ID:58379.1Re-query CCDS DB by GeneID:27020See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58379.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000562924.5 ENSP00000456349.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000562924.5Link to Ensembl Protein Viewer:ENSP00000456349.1Re-query CCDS DB by Nucleotide ID:ENST00000562924Re-query CCDS DB by Protein ID:ENSP00000456349
Original member Current member NCBI NM_001161364.2 NP_001154836.1 Accepted alive Link to Nucleotide Sequence:NM_001161364.2Link to Protein Sequence:NP_001154836.1Re-query CCDS DB by Nucleotide ID:NM_001161364Re-query CCDS DB by Protein ID:NP_001154836Link to BLAST:NP_001154836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154836.1 278 Q9Y639-3 278 100% 0 0

Chromosomal Locations for CCDS 58379.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 73561910 73561970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73563236 73563245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73570150 73570423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73573662 73573795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73587524 73587618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73591966 73592137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73633125 73633215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGTCGGGTTCGTCGCTGCCCAGCGCCCTGGCCCTCTCGCTGTTGCTGGTCTCTGGCTCCCTCCTCCCAG
GGCCAGGCGCCGCTCAGAACGAGCCAAGGATTGTCACCAGTGAAGAGGTCATTATTCGAGACAGCCCTGT
TCTCCCTGTCACCCTGCAGTGTAACCTCACCTCCAGCTCTCACACCCTTACATACAGCTACTGGACAAAG
AATGGGGTGGAACTGAGTGCCACTCGTAAGAATGCCAGCAACATGGAGTACAGGATCAATAAGCCGAGAG
CTGAGGATTCAGGCGAATACCACTGCGTATATCACTTTGTCAGCGCTCCTAAAGCAAACGCCACCATTGA
AGTGAAAGCCGCTCCTGACATCACTGGCCATAAACGGAGTGAGAACAAGAATGAAGGGCAGGATGCCACT
ATGTATTGCAAGTCAGTTGGCTACCCCCACCCAGACTGGATATGGCGCAAGAAGGAGAACGGGATGCCCA
TGGACATTGTCAATACCTCTGGCCGCTTCTTCATCATCAACAAGGAAAATTACACTGAGTTGAACATTGT
GAACCTGCAGATCACGGAAGACCCTGGCGAGTATGAATGTAATGCCACCAACGCCATTGGCTCCGCCTCT
GTTGTCACTGTCCTCAGGGTGCGGAGCCACCTGGCCCCACTCTGGCCTTTCTTGGGAATTCTGGCTGAAA
TTATCATCCTTGTGGTGATCATTGTTGTGTATGAGAAGAGGAAGAGGCCAGATGAGGTTCCTGACGCTGG
ACCAATGAAAACCAACTCTACCAACAATCACAAAGATAAAAACTTGCGCCAGAGAAACACAAATTAA

Translation (278 aa):
MSGSSLPSALALSLLLVSGSLLPGPGAAQNEPRIVTSEEVIIRDSPVLPVTLQCNLTSSSHTLTYSYWTK
NGVELSATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAT
MYCKSVGYPHPDWIWRKKENGMPMDIVNTSGRFFIINKENYTELNIVNLQITEDPGEYECNATNAIGSAS
VVTVLRVRSHLAPLWPFLGILAEIIILVVIIVVYEKRKRPDEVPDAGPMKTNSTNNHKDKNLRQRNTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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