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Report for CCDS58547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58547.1 Public Homo sapiens 17 GJD3 24 110 108 CCDS HistoryNCBI Gene:125111Re-query CCDS DB by CCDS ID:58547.1Re-query CCDS DB by GeneID:125111See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58547.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000578689.2 ENSP00000463752.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000578689.2Link to Ensembl Protein Viewer:ENSP00000463752.1Re-query CCDS DB by Nucleotide ID:ENST00000578689Re-query CCDS DB by Protein ID:ENSP00000463752
Original member Current member NCBI NM_152219.4 NP_689343.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152219.4Link to Protein Sequence:NP_689343.3Re-query CCDS DB by Nucleotide ID:NM_152219Re-query CCDS DB by Protein ID:NP_689343Link to BLAST:NP_689343.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689343.3 294 Q8N144-1 294 100% 0 0

Chromosomal Locations for CCDS 58547.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40362931 40363815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGGGGAGTGGGCGTTCCTGGGCTCGCTGCTGGACGCCGTGCAGCTGCAGTCGCCGCTCGTGGGCCGCC
TCTGGCTGGTGGTCATGCTGATCTTCCGCATCCTGGTGCTGGCCACGGTGGGCGGCGCCGTGTTCGAGGA
CGAGCAAGAGGAGTTCGTGTGCAACACGCTGCAGCCGGGCTGTCGCCAGACCTGCTACGACCGCGCCTTC
CCGGTCTCCCACTACCGCTTCTGGCTCTTCCACATCCTGCTGCTCTCGGCGCCCCCGGTGCTGTTCGTCG
TCTACTCCATGCACCGGGCAGGCAAGGAGGCGGGCGGCGCTGAGGCGGCGGCGCAGTGCGCCCCCGGACT
GCCCGAGGCCCAGTGCGCGCCGTGCGCCCTGCGCGCCCGCCGCGCGCGCCGCTGCTACCTGCTGAGCGTG
GCGCTGCGCCTGCTGGCCGAGCTGACCTTCCTGGGCGGCCAGGCGCTGCTCTACGGCTTCCGCGTGGCCC
CGCACTTCGCGTGCGCCGGTCCGCCCTGCCCGCACACGGTCGACTGCTTCGTGAGCCGGCCCACCGAGAA
GACCGTCTTCGTGCTCTTCTATTTCGCGGTGGGGCTGCTGTCGGCGCTGCTCAGCGTAGCCGAGCTGGGC
CACCTGCTCTGGAAGGGCCGCCCGCGCGCCGGGGAGCGTGACAACCGCTGCAACCGTGCACACGAAGAGG
CGCAGAAGCTGCTCCCGCCGCCGCCGCCGCCACCTCCGCCACCGGCCCTGCCCTCCCGGCGCCCCGGCCC
CGAGCCGTGCGCCCCGCCGGCCTATGCGCACCCGGCGCCGGCCAGCCTCCGCGAGTGCGGCAGCGGCCGC
GGCAAGGCGTCACCGGCCACCGGCCGCCGAGATCTGGCCATCTAG

Translation (294 aa):
MGEWAFLGSLLDAVQLQSPLVGRLWLVVMLIFRILVLATVGGAVFEDEQEEFVCNTLQPGCRQTCYDRAF
PVSHYRFWLFHILLLSAPPVLFVVYSMHRAGKEAGGAEAAAQCAPGLPEAQCAPCALRARRARRCYLLSV
ALRLLAELTFLGGQALLYGFRVAPHFACAGPPCPHTVDCFVSRPTEKTVFVLFYFAVGLLSALLSVAELG
HLLWKGRPRAGERDNRCNRAHEEAQKLLPPPPPPPPPPALPSRRPGPEPCAPPAYAHPAPASLRECGSGR
GKASPATGRRDLAI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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