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Report for CCDS58589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58589.1 Public Homo sapiens 17 DNAI2 24 110 108 CCDS HistoryNCBI Gene:64446Re-query CCDS DB by CCDS ID:58589.1Re-query CCDS DB by GeneID:64446See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 58589.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000582036.5 ENSP00000461950.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000582036.5Link to Ensembl Protein Viewer:ENSP00000461950.1Re-query CCDS DB by Nucleotide ID:ENST00000582036Re-query CCDS DB by Protein ID:ENSP00000461950
Original member Current member NCBI NM_001172810.3 NP_001166281.1 Accepted alive Link to Nucleotide Sequence:NM_001172810.3Link to Protein Sequence:NP_001166281.1Re-query CCDS DB by Nucleotide ID:NM_001172810Re-query CCDS DB by Protein ID:NP_001166281Link to BLAST:NP_001166281.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166281.1 593 Q9GZS0-2 593 100% 0 0

Chromosomal Locations for CCDS 58589.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74281818 74282000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74285040 74285201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74286977 74287098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74289594 74289736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74291020 74291133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74299718 74299857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74301046 74301168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74305219 74305442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74309253 74309388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74310053 74310163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74312003 74312230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74314121 74314216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGAGATTGTGTACGTGTACGTCAAGAAGCGCAGCGAGTTCGGGAAGCAGTGCAATTTCTCGGACCGCC
AGGCCGAGCTGAACATCGACATCATGCCCAACCCTGAGCTGGCCGAGCAGTTCGTGGAGCGGAACCCAGT
GGACACGGGCATCCAGTGCTCGATCAGCATGTCGGAACACGAGGCCAACTCAGAGCGGTTTGAGATGGAG
ACCCGGGGAGTTAACCATGTCGAGGGGGGCTGGCCCAAGGACGTGAACCCCCTGGAGCTGGAGCAGACCA
TCCGTTTCCGGAAGAAAGTGGAGAAAGATGAGAACTACGTTAACGCCATCATGCAGCTCGGCTCTATCAT
GGAGCACTGCATCAAGCAGAACAATGCCATTGACATCTATGAAGAGTATTTCAATGACGAGGAGGCCATG
GAAGTGATGGAGGAGGACCCTTCAGCTAAAACCATCAATGTGTTCAGGGACCCCCAGGAAATCAAGAGGG
CTGCCACACACCTCTCCTGGCACCCCGATGGCAACAGGAAGTTGGCAGTGGCATACTCCTGCTTGGATTT
TCAGCGGGCACCTGTGGGCATGAGCAGCGATTCATACATCTGGGACCTGGAAAACCCCAACAAGCCTGAA
CTTGCTCTGAAGCCATCGTCTCCACTCGTGACGTTGGAGTTCAACCCCAAAGATTCCCACGTACTCCTGG
GTGGCTGCTACAATGGACAGATAGCCTGCTGGGACACCCGAAAGGGCAGCCTGGTGGCGGAGCTATCCAC
CATTGAGTCCAGCCACCGAGACCCTGTGTATGGCACCATCTGGCTGCAGTCGAAGACGGGCACCGAGTGC
TTCTCAGCTTCCACGGATGGGCAGGTCATGTGGTGGGACATCCGAAAGATGAGCGAGCCCACTGAAGTTG
TGATCTTGGACATCACCAAGAAGGAACAGTTGGAAAATGCCTTGGGGGCCATCTCCCTGGAGTTCGAATC
TACTTTGCCCACCAAGTTCATGGTGGGGACCGAGCAGGGCATCGTCATCTCCTGCAACCGCAAGGCCAAG
ACGTCAGCTGAAAAGATTGTGTGCACCTTCCCGGGCCATCATGGCCCCATCTACGCCCTCCAGAGAAACC
CCTTCTACCCGAAGAACTTCCTGACGGTTGGCGACTGGACAGCCCGCATTTGGTCTGAAGACAGCCGGGA
ATCGTCCATCATGTGGACCAAGTACCACATGGCTTACCTCACTGATGCTGCCTGGAGCCCCGTGAGGCCG
ACCGTTTTCTTTACCACCAGGATGGACGGAACCCTGGATATCTGGGACTTCATGTTCGAGCAGTGCGATC
CCACCCTCAGCTTGAAGGACAATGGGTGTCTCATCGCCTGCGGCTCCCAGCTGGGGACAACCACCCTGCT
GGAGGTCTCGCCTGGGCTCTCTACCCTCCAGAGGAATGAGAAGAACGTAGCCTCTTCCATGTTTGAGCGT
GAGACCCGGCGAGAGAAGATCCTGGAGGCCAGGCACCGGGAGATGCGGCTGAAGGAGAAGGGTAAGGCGG
AGGGCAGGGATGAGGAGCAGACCGATGAGGAGCTGGCCGTAGACCTGGAGGCGCTGGTCAGCAAGGCCGA
GGAGGAGTTCTTCGACATCATCTTCGCAGAGCTGAAGAAGAAGGAGGCAGACGCCATAAAGCTGACGCCA
GTGCCTCAGCAACCAAGTCCAGAAGAAGACCAGGTGGTGGAGGAGGGAGAGGAAGCAGCGGGGGAAGAAG
GGGATGAAGAAGTGGAAGAAGACTTAGCCTAG

Translation (593 aa):
MEIVYVYVKKRSEFGKQCNFSDRQAELNIDIMPNPELAEQFVERNPVDTGIQCSISMSEHEANSERFEME
TRGVNHVEGGWPKDVNPLELEQTIRFRKKVEKDENYVNAIMQLGSIMEHCIKQNNAIDIYEEYFNDEEAM
EVMEEDPSAKTINVFRDPQEIKRAATHLSWHPDGNRKLAVAYSCLDFQRAPVGMSSDSYIWDLENPNKPE
LALKPSSPLVTLEFNPKDSHVLLGGCYNGQIACWDTRKGSLVAELSTIESSHRDPVYGTIWLQSKTGTEC
FSASTDGQVMWWDIRKMSEPTEVVILDITKKEQLENALGAISLEFESTLPTKFMVGTEQGIVISCNRKAK
TSAEKIVCTFPGHHGPIYALQRNPFYPKNFLTVGDWTARIWSEDSRESSIMWTKYHMAYLTDAAWSPVRP
TVFFTTRMDGTLDIWDFMFEQCDPTLSLKDNGCLIACGSQLGTTTLLEVSPGLSTLQRNEKNVASSMFER
ETRREKILEARHREMRLKEKGKAEGRDEEQTDEELAVDLEALVSKAEEEFFDIIFAELKKKEADAIKLTP
VPQQPSPEEDQVVEEGEEAAGEEGDEEVEEDLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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