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Report for CCDS58818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58818.1 Public Homo sapiens 3 RPL15 24 110 108 CCDS HistoryNCBI Gene:6138Re-query CCDS DB by CCDS ID:58818.1Re-query CCDS DB by GeneID:6138See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58818.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000456530.7 ENSP00000398788.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456530.7Link to Ensembl Protein Viewer:ENSP00000398788.2Re-query CCDS DB by Nucleotide ID:ENST00000456530Re-query CCDS DB by Protein ID:ENSP00000398788
Original member Current member NCBI NM_001253384.2 NP_001240313.1 Accepted alive Link to Nucleotide Sequence:NM_001253384.2Link to Protein Sequence:NP_001240313.1Re-query CCDS DB by Nucleotide ID:NM_001253384Re-query CCDS DB by Protein ID:NP_001240313Link to BLAST:NP_001240313.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240313.1 145 P61313-2 145 100% 0 0

Chromosomal Locations for CCDS 58818.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 23917860 23918031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 23918440 23918576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 23919196 23919246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 23921598 23921675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGGGTGCATACAAGTACATCCAGGAGCTATGGAGAAAGAAGCAGTCTGATGTCATGCGCTTTCTTCTGA
GG
GTCCGCTGCTGGCAGTACCGCCAGCTCTCTGCTCTCCACAGGGCTCCCCGCCCCACCCGGCCTGATAA
A
GCGCGCCGACTGGGCTACAAGGCCAAGCAAGGTTACGTTATATATAGGATTCGTGTTCGCCGTGGTGGC
CGA
AAACGCCCAGTTCCTAAGGGTGCAACTTACGGCAAGCCTGTCCATCATGGTGTTAACCAGCTAAAGT
TT
GCTCGAAGCCTTCAGTCCGTTGCAGAGGAGCGAGCTGGACGCCACTGTGGGGCTCTGAGAGTCCTGAA
T
TCTTACTGGATGGAGTCTCACTCTCACTCAGGTGGGAGTGCAGTGGGGCAATCACGGCTCACTGCAACC
TCT
GTCTCCCGGGTTTGA


Translation (145 aa):
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG
R
KRPVPKGATYGKPVHHGVNQLKFARSLQSVAE
ERAGRHCGALRVLNSYWMESHSHSGGSAVGQSRLTAT
S
VSRV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser