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Report for CCDS58845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58845.1 Public Homo sapiens 3 QTRT2 24 110 108 CCDS HistoryNCBI Gene:79691Re-query CCDS DB by CCDS ID:58845.1Re-query CCDS DB by GeneID:79691See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58845.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000493014.1 ENSP00000419169.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493014.1Link to Ensembl Protein Viewer:ENSP00000419169.1Re-query CCDS DB by Nucleotide ID:ENST00000493014Re-query CCDS DB by Protein ID:ENSP00000419169
Original member Current member NCBI NM_001256836.2 NP_001243765.1 Accepted alive Link to Nucleotide Sequence:NM_001256836.2Link to Protein Sequence:NP_001243765.1Re-query CCDS DB by Nucleotide ID:NM_001256836Re-query CCDS DB by Protein ID:NP_001243765Link to BLAST:NP_001243765.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243765.1 309 Q9H974-3 309 100% 0 0

Chromosomal Locations for CCDS 58845.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 114056850 114056864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114070626 114070838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114076743 114076942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114079906 114080057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114082677 114082794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114085673 114085904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGTTTGTTGGCAGTCTGTGTCTGTGTGGAGTGTTGCAGGACGAGTGGAAATGACTGTTTCCAAGTTCA
TGGCAATTCAGAAGGCCCTTCAGCCAGACTGGTTCCAGTGCCTCTCCGATGGAGAAGTATCTTGTAAGGA
AGCAACTTCCATAAAAAGGGTCAGAAAGTCTGTTGACCGATCACTTCTTTTCTTGGATAACTGTCTGCGG
CTGCAGGAAGAGTCAGAGGTTCTTCAGAAGAGTGTGATCATTGGAGTGATTGAAGGTGGAGATGTGATGG
AAGAGAGGCTGAGGTCAGCACGAGAGACAGCCAAGCGGCCTGTGGGTGGCTTCCTTCTGGATGGTTTTCA
AGGAAATCCAACAACCCTGGAGGCTAGACTACGCTTGCTGTCATCAGTCACTGCAGAGCTGCCGGAGGAC
AAGCCAAGGCTCATATCTGGTGTTAGTCGGCCAGATGAGGTGCTCGAGTGTATTGAAAGAGGAGTGGACT
TATTTGAGAGTTTTTTCCCTTATCAAGTAACAGAGCGGGGATGTGCCCTGACTTTCAGTTTTGATTACCA
GCCGAATCCTGAAGAGACACTACTACAACAAAATGGAACACAAGAAGAAATAAAATGTATGGATCAAATA
AAGAAAATTGAAACAACTGGTTGCAACCAAGAAATAACATCATTTGAAATTAATCTGAAGGAAAAAAAGT
ACCAGGAGGACTTTAACCCGCTGGTGAGAGGATGTTCCTGTTACTGCTGTAAGAATCACACTCGGGCATA
CATCCACCATCTGCTGGTGACCAATGAGCTGCTGGCCGGAGTCCTGCTTATGATGCACAACTTTGAACAC
TACTTTGGGTTTTTCCATTACATCCGGGAAGCACTAAAAAGTGACAAACTGGCACAGTTGAAAGAGCTCA
TCCACAGGCAAGCATCTTGA

Translation (309 aa):
MVCWQSVSVWSVAGRVEMTVSKFMAIQKALQPDWFQCLSDGEVSCKEATSIKRVRKSVDRSLLFLDNCLR
LQEESEVLQKSVIIGVIEGGDVMEERLRSARETAKRPVGGFLLDGFQGNPTTLEARLRLLSSVTAELPED
KPRLISGVSRPDEVLECIERGVDLFESFFPYQVTERGCALTFSFDYQPNPEETLLQQNGTQEEIKCMDQI
KKIETTGCNQEITSFEINLKEKKYQEDFNPLVRGCSCYCCKNHTRAYIHHLLVTNELLAGVLLMMHNFEH
YFGFFHYIREALKSDKLAQLKELIHRQAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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