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Report for CCDS58857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58857.1 Public Homo sapiens 3 ZIC4 24 110 108 CCDS HistoryNCBI Gene:84107Re-query CCDS DB by CCDS ID:58857.1Re-query CCDS DB by GeneID:84107See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58857.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000491672.5 ENSP00000418277.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000491672.5Link to Ensembl Protein Viewer:ENSP00000418277.1Re-query CCDS DB by Nucleotide ID:ENST00000491672Re-query CCDS DB by Protein ID:ENSP00000418277
Original member Current member NCBI NM_001243256.2 NP_001230185.1 Accepted alive Link to Nucleotide Sequence:NM_001243256.2Link to Protein Sequence:NP_001230185.1Re-query CCDS DB by Nucleotide ID:NM_001243256Re-query CCDS DB by Protein ID:NP_001230185Link to BLAST:NP_001230185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230185.1 128 Q8N9L1-4 128 100% 0 0

Chromosomal Locations for CCDS 58857.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 147388859 147388859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147390931 147391246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 147402728 147402797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGAGATACAAGACATCCTTGGTGATGAGGAAACGATTACGGCTTTACCGAAACACTCTTAAAGAGTCAA
GCGAGAAGCCCTTCAGATGCGAGTTCGAGGGCTGCGAGCGGCGCTTCGCCAACAGCAGCGACCGTAAGAA
GCATTCGCACGTGCACACTAGCGACAAGCCATACACGTGCAAGGTGCGGGGCTGCGACAAGTGCTACACG
CACCCCAGCTCGCTGCGTAAGCACATGAAGGTGCACGGGCGCTCGCCGCCGCCCAGCTCTGGCTACGATT
CGGCTACACCGTCTGCCCTCGTGTCGCCCTCGTCGGACTGCGGCCACAAGTCCCAGGTGGCCTCCTCGGC
GGCGGTGGCGGCGCGTACCGCCGACTTGAGCGAATGA

Translation (128 aa):
MRYKTSLVMRKRLRLYRNTLKESSEKPFRCEFEGCERRFANSSDRKKHSHVHTSDKPYTCKVRGCDKCYT
HPSSLRKHMKVHGRSPPPSSGYDSATPSALVSPSSDCGHKSQVASSAAVAARTADLSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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