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Report for CCDS58905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58905.1 Public Homo sapiens 4 RASSF6 24 110 108 CCDS HistoryNCBI Gene:166824Re-query CCDS DB by CCDS ID:58905.1Re-query CCDS DB by GeneID:166824See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58905.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335049.5 ENSP00000335582.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335049.5Link to Ensembl Protein Viewer:ENSP00000335582.5Re-query CCDS DB by Nucleotide ID:ENST00000335049Re-query CCDS DB by Protein ID:ENSP00000335582
Original member Current member NCBI NM_001270392.1 NP_001257321.1 Accepted alive Link to Nucleotide Sequence:NM_001270392.1Link to Protein Sequence:NP_001257321.1Re-query CCDS DB by Nucleotide ID:NM_001270392Re-query CCDS DB by Protein ID:NP_001257321Link to BLAST:NP_001257321.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257321.1 325 Q6ZTQ3-3 325 100% 0 0

Chromosomal Locations for CCDS 58905.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 73576235 73576310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73576410 73576507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73576613 73576731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73581817 73581868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73582189 73582290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73585180 73585364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73587840 73587934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73593451 73593593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73615891 73615936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73620439 73620500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGCTCTGGGAGGAGACAGGCGCCGCCCCTGCGCCCGCGCGGGCCTCGGACCTCCCCTACAGAATTCACT
TCCTGTCCTCTGGCCTCATTCTGGTCACAAGGCAACTGACTGAAGATGGCAAACTAATTGTTGAAGGAAT
GCTGGACATTTTCTGGGGAGTAAAACGACCTATACAGCTAAAAATACAAGATGAGAAGCCATTCTCTTCT
TTTACTAGTATGAAGTCATCAGACGTCTTCTCCAGCAAAGGAATGACACGCTGGGGGGAATTTGACGATC
TCTATCGTATTAGTGAGCTGGACAGGACCCAGATTCCTATGTCTGAAAAAAGGAATTCCCAGGAAGACTA
TTTATCTTATCACAGCAACACCCTGAAGCCACATGCAAAGGATGAACCAGACTCCCCAGTGCTCTATAGA
ACCATGAGTGAAGCAGCTCTGGTGAGAAAAAGGATGAAGCCTCTGATGATGGACAGAAAAGAAAGACAGA
AAAATAGAGCCTCTATTAATGGACACTTCTATAACCATGAAACATCAATTTTCATTCCAGCCTTTGAATC
AGAAACTAAGGTCAGAGTAAACAGTAACATGAGAACTGAAGAAGTAATAAAGCAACTTCTCCAAAAATTT
AAGATTGAAAATAGTCCCCAGGATTTTGCTCTTCACATTATTTTTGCAACAGGAGAACAAAGACGACTAA
AGAAGACAGACATTCCGCTACTGCAGAGGCTCCTACAGGGACCTTCTGAAAAGAATGCTCGCATTTTCCT
CATGGATAAAGATGCAGAAGAAATTAGCAGTGATGTGGCTCAGTACATTAACTTTCACTTTTCTCTCTTG
GAATCCATTCTTCAAAGATTAAATGAAGAAGAGAAAAGAGAGATTCAAAGAATAGTAACAAAATTCAATA
AAGAAAAGGCGATTATACTGAAATGTCTTCAAAATAAACTAGTAATAAAAACAGAGACAACAGTTTAG

Translation (325 aa):
MLWEETGAAPAPARASDLPYRIHFLSSGLILVTRQLTEDGKLIVEGMLDIFWGVKRPIQLKIQDEKPFSS
FTSMKSSDVFSSKGMTRWGEFDDLYRISELDRTQIPMSEKRNSQEDYLSYHSNTLKPHAKDEPDSPVLYR
TMSEAALVRKRMKPLMMDRKERQKNRASINGHFYNHETSIFIPAFESETKVRVNSNMRTEEVIKQLLQKF
KIENSPQDFALHIIFATGEQRRLKKTDIPLLQRLLQGPSEKNARIFLMDKDAEEISSDVAQYINFHFSLL
ESILQRLNEEEKREIQRIVTKFNKEKAIILKCLQNKLVIKTETTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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