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Report for CCDS58911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58911.1 Public Homo sapiens 4 FAM13A 24 110 108 CCDS HistoryNCBI Gene:10144Re-query CCDS DB by CCDS ID:58911.1Re-query CCDS DB by GeneID:10144See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58911.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513837.5 ENSP00000423252.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513837.5Link to Ensembl Protein Viewer:ENSP00000423252.1Re-query CCDS DB by Nucleotide ID:ENST00000513837Re-query CCDS DB by Protein ID:ENSP00000423252
Original member Current member NCBI NM_001265580.2 NP_001252509.1 Accepted alive Link to Nucleotide Sequence:NM_001265580.2Link to Protein Sequence:NP_001252509.1Re-query CCDS DB by Nucleotide ID:NM_001265580Re-query CCDS DB by Protein ID:NP_001252509Link to BLAST:NP_001252509.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001252509.1 669 O94988-6 669 100% 0 0

Chromosomal Locations for CCDS 58911.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88728533 88728659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88731327 88731428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88732002 88732198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88737472 88737555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88739030 88739125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88746932 88747015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88747631 88747851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88748952 88749033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88749771 88749909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88750424 88750637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88758754 88758901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88767553 88767595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88767983 88768059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88781165 88781351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88787753 88787932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88822976 88823004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGGCTTGTGAAATCATGCCTCTGCAAAGACTCTTAGAAAGAACCATCCGATCAGCTGTAGAACAACATC
TTTTTGATGTTAATAACTCTGGAGGTCAAAGTTCAGAGGACTCAGAATCTGGAACACTATCAGCATCTTC
TGCCACATCTGCCAGACAGCGCCGCCGCCAGTCCAAGGAGCAGGATGAAGTTCGACATGGGAGAGACAAG
GGACTTATCAACAAAGAAAATACTCCTTCTGGGTTCAACCACCTTGATGATTGTATTTTGAATACTCAGG
AAGTCGAAAAGGTACACAAAAATACTTTTGGTTGTGCTGGAGAAAGGAGCAAGCCTAAACGTCAGAAATC
CAGTACTAAACTTTCTGAGCTTCATGACAATCAGGACGGTCTTGTGAATATGGAAAGTCTCAATTCCACA
CGATCTCATGAGAGAACTGGACCTGATGATTTTGAATGGATGTCTGATGAAAGGAAAGGAAATGAAAAAG
ATGGTGGACACACTCAGCATTTTGAGAGCCCCACAATGAAGATCCAGGAGCATCCCAGCCTATCTGACAC
CAAACAGCAGAGAAATCAAGATGCCGGTGACCAGGAGGAGAGCTTTGTCTCCGAAGTGCCCCAGTCGGAC
CTGACTGCATTGTGTGATGAAAAGAACTGGGAAGAGCCTATCCCTGCTTTCTCCTCCTGGCAGCGGGAGA
ACAGTGACTCTGATGAAGCCCACCTCTCGCCGCAGGCTGGGCGCCTGATCCGTCAGCTGCTGGACGAAGA
CAGCGACCCCATGCTCTCTCCTCGGTTCTACGCTTATGGGCAGAGCAGGCAATACCTGGATGACACAGAA
GTGCCTCCTTCCCCACCAAACTCCCATTCTTTCATGAGGCGGCGAAGCTCCTCTCTGGGGTCCTATGATG
ATGAGCAAGAGGACCTGACACCTGCCCAGCTCACACGAAGGATTCAGAGCCTTAAAAAGAAGATCCGGAA
GTTTGAAGATAGATTCGAAGAAGAGAAGAAGTACAGACCTTCCCACAGTGACAAAGCAGCCAATCCGGAG
GTTCTGAAATGGACAAATGACCTTGCCAAATTCCGGAGACAACTTAAAGAATCAAAACTAAAGATATCTG
AAGAGGACCTAACTCCCAGGATGCGGCAGCGAAGCAACACACTCCCCAAGAGTTTTGGTTCCCAACTTGA
GAAAGAAGATGAGAAGAAGCAAGAGCTGGTGGATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAA
TCTATTCAGAGGAAGCTCCAGGAGAAGCGAGCGGAAAGCAGCCGCCCTGAGGACATTAAGGATATGACCA
AAGACCAGATTGCTAATGAGAAAGTGGCTCTGCAGAAAGCTCTGTTATATTATGAAAGCATTCATGGACG
GCCGGTAACAAAGAACGAACGGCAGGTGATGAAGCCACTATACGACAGGTACCGGCTGGTCAAACAGATC
CTCTCCCGAGCTAACACCATACCCATCATTGGTTCCCCCTCCAGCAAGCGGAGAAGCCCTTTGCTGCAGC
CAATTATCGAGGGCGAAACTGCTTCCTTCTTCAAGGAGATAAAGGAAGAAGAGGAGGGGTCAGAAGACGA
TAGCAATGTGAAGCCAGACTTCATGGTCACTCTGAAAACCGATTTCAGTGCACGATGCTTTCTGGACCAA
TTCGAAGATGACGCTGATGGATTTATTTCCCCAATGGATGATAAAATACCATCAAAATGCAGCCAGGACA
CAGGGCTTTCAAATCTCCATGCTGCCTCAATACCTGAACTCCTGGAACACCTCCAGGAAATGAGAGAAGA
AAAGAAAAGGATTCGAAAGAAACTTCGGGATTTTGAAGACAACTTTTTCAGACAGAATGGAAGAAATGTC
CAGAAGGAAGACCGCACTCCTATGGCTGAAGAATACAGTGAATATAAGCACATAAAGGCGAAACTGAGGC
TCCTGGAGGTGCTCATCAGCAAGAGAGACACTGATTCCAAGTCCATGTGA

Translation (669 aa):
MACEIMPLQRLLERTIRSAVEQHLFDVNNSGGQSSEDSESGTLSASSATSARQRRRQSKEQDEVRHGRDK
GLINKENTPSGFNHLDDCILNTQEVEKVHKNTFGCAGERSKPKRQKSSTKLSELHDNQDGLVNMESLNST
RSHERTGPDDFEWMSDERKGNEKDGGHTQHFESPTMKIQEHPSLSDTKQQRNQDAGDQEESFVSEVPQSD
LTALCDEKNWEEPIPAFSSWQRENSDSDEAHLSPQAGRLIRQLLDEDSDPMLSPRFYAYGQSRQYLDDTE
VPPSPPNSHSFMRRRSSSLGSYDDEQEDLTPAQLTRRIQSLKKKIRKFEDRFEEEKKYRPSHSDKAANPE
VLKWTNDLAKFRRQLKESKLKISEEDLTPRMRQRSNTLPKSFGSQLEKEDEKKQELVDKAIKPSVEATLE
SIQRKLQEKRAESSRPEDIKDMTKDQIANEKVALQKALLYYESIHGRPVTKNERQVMKPLYDRYRLVKQI
LSRANTIPIIGSPSSKRRSPLLQPIIEGETASFFKEIKEEEEGSEDDSNVKPDFMVTLKTDFSARCFLDQ
FEDDADGFISPMDDKIPSKCSQDTGLSNLHAASIPELLEHLQEMREEKKRIRKKLRDFEDNFFRQNGRNV
QKEDRTPMAEEYSEYKHIKAKLRLLEVLISKRDTDSKSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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