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Report for CCDS58948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58948.1 Public Homo sapiens 5 SLC38A9 24 110 108 CCDS HistoryNCBI Gene:153129Re-query CCDS DB by CCDS ID:58948.1Re-query CCDS DB by GeneID:153129See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58948.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512595.5 ENSP00000427335.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512595.5Link to Ensembl Protein Viewer:ENSP00000427335.1Re-query CCDS DB by Nucleotide ID:ENST00000512595Re-query CCDS DB by Protein ID:ENSP00000427335
Original member Current member NCBI NM_001258287.1 NP_001245216.1 Accepted alive Link to Nucleotide Sequence:NM_001258287.1Link to Protein Sequence:NP_001245216.1Re-query CCDS DB by Nucleotide ID:NM_001258287Re-query CCDS DB by Protein ID:NP_001245216Link to BLAST:NP_001245216.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245216.1 498 Q8NBW4-3 498 100% 0 0

Chromosomal Locations for CCDS 58948.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 55626494 55626659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55627891 55627980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55633754 55633902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55635544 55635657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55645789 55645895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55652529 55652723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55656715 55656774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55664693 55664863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55669228 55669321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55669557 55669620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55669758 55669879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55672563 55672695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55691189 55691220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGCTATTTGCATTTTAACATGGAGAATCCGGCCTTTCTGTATAGAGCCCACAAACATCGTGAATGTGA
ATCATGTCATTCAGAGGGTTAGTGACCATGCCTCTGCCATGAACAAGAGAATTCATTACTACAGCCGGCT
CACCACTCCTGCAGACAAGGCACTGATTGCCCCAGACCATGTAGTTCCAGCTCCAGAAGAGTGCTATGTG
TATAGTCCATTGGGCTCTGCTTATAAACTTCAAAGTTACACTGAAGGATACGGTAAAAACACCAGTTTAG
TAACCATTTTTATGATTTGGAATACCATGATGGGAACATCTATACTAAGCATTCCTTGGGGCATAAAACA
GGCTGGATTTACTACTGGAATGTGTGTCATCATACTGATGGGCCTTTTAACACTTTATTGCTGCTACAGA
GTAGTGAAATCACGGACTATGATGTTTTCGTTGGATACCACTAGCTGGGAATATCCAGATGTCTGCAGAC
ATTATTTCGGCTCCTTTGGGCAGTGGTCGAGTCTCCTTTTCTCCTTGGTGTCTCTCATTGGAGCAATGAT
AGTTTATTGGGTGCTTATGTCAAATTTTCTTTTTAATACTGGAAAGTTTATTTTTAATTTTATTCATCAC
ATTAATGACACAGACACTATACTGAGTACCAATAATAGCAACCCTGTGATTTGTCCAAGTGCCGGGAGTG
GAGGCCATCCTGACAACAGCTCTATGATTTTCTATGCCAATGACACAGGAGCCCAACAGTTTGAAAAGTG
GTGGGATAAGTCCAGGACAGTCCCCTTTTATCTTGTAGGGCTCCTCCTCCCACTGCTCAATTTCAAGTCT
CCTTCATTTTTTTCAAAATTTAATATCCTAGAGATAAGATTTCAGTTTCCACAGCTGACTGGAGTGCTTA
CCCTTGCTTTTTTTATTCATAATTGTATCATCACACTCTTGAAGAACAACAAGAAACAAGAAAACAATGT
GAGGGACTTGTGCATTGCTTATATGCTGGTGACATTAACTTATCTCTATATTGGAGTCCTGGTTTTTGCT
TCATTTCCTTCACCACCATTATCCAAAGATTGTATTGAGCAGAATTTTTTAGACAACTTCCCTAGCAGTG
ACACCCTGTCCTTCATTGCAAGGATATTCCTGCTGTTCCAGATGATGACTGTATACCCACTCTTAGGCTA
CCTGGCTCGTGTCCAGCTTTTGGGCCATATCTTCGGTGACATTTATCCTAGCATTTTCCATGTGCTGATT
CTTAATCTAATTATTGTGGGAGCTGGAGTGATCATGGCCTGTTTCTACCCAAACATAGGAGGGATCATAA
GATATTCAGGAGCAGCATGTGGACTGGCCTTTGTATTCATATACCCATCTCTCATCTATATAATTTCCCT
CCACCAAGAAGAGCGTCTGACATGGCCTAAATTAATCTTCCACGTTTTCATCATCATTTTGGGCGTGGCT
AACCTGATTGTTCAGTTTTTTATGTGA

Translation (498 aa):
MAICILTWRIRPFCIEPTNIVNVNHVIQRVSDHASAMNKRIHYYSRLTTPADKALIAPDHVVPAPEECYV
YSPLGSAYKLQSYTEGYGKNTSLVTIFMIWNTMMGTSILSIPWGIKQAGFTTGMCVIILMGLLTLYCCYR
VVKSRTMMFSLDTTSWEYPDVCRHYFGSFGQWSSLLFSLVSLIGAMIVYWVLMSNFLFNTGKFIFNFIHH
INDTDTILSTNNSNPVICPSAGSGGHPDNSSMIFYANDTGAQQFEKWWDKSRTVPFYLVGLLLPLLNFKS
PSFFSKFNILEIRFQFPQLTGVLTLAFFIHNCIITLLKNNKKQENNVRDLCIAYMLVTLTYLYIGVLVFA
SFPSPPLSKDCIEQNFLDNFPSSDTLSFIARIFLLFQMMTVYPLLGYLARVQLLGHIFGDIYPSIFHVLI
LNLIIVGAGVIMACFYPNIGGIIRYSGAACGLAFVFIYPSLIYIISLHQEERLTWPKLIFHVFIIILGVA
NLIVQFFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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