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Report for CCDS58979.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58979.2 Public Homo sapiens 5 PCDHGA4 24 110 108 CCDS HistoryNCBI Gene:56111Re-query CCDS DB by CCDS ID:58979.2Re-query CCDS DB by GeneID:56111See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 58979.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and primate conservation data.

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 58979.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000571252.3 ENSP00000458570.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000571252.3Link to Ensembl Protein Viewer:ENSP00000458570.2Re-query CCDS DB by Nucleotide ID:ENST00000571252Re-query CCDS DB by Protein ID:ENSP00000458570
Original member Current member NCBI NM_018917.4 NP_061740.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018917.4Link to Protein Sequence:NP_061740.2Re-query CCDS DB by Nucleotide ID:NM_018917Re-query CCDS DB by Protein ID:NP_061740Link to BLAST:NP_061740.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061740.2 962 Q9Y5G9-1 962 100% 0 0

Chromosomal Locations for CCDS 58979.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141355108 141357621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2889 nt):
ATGCACTTTATTTTGGACCCAGAAGATCCTGGGGCTCCTCAGGCCTCGACAGAGGGAAAACCGAAGCACA
GGCGACTCCGCGGCGGGGTTGTAATGGCGGCGCCTCCTGCTCGCCCAGACCACACCCGGCTGCTCCAGAT
CTGCCTTCTCCTGGGGGTTCTGGTGGAAATCAGGGCCGAACAGATTCTCTACTCGGTGTTTGAGGAGCAG
GAAGAAGGCTCAGTGGTGGGCAACATCGCCAAGGACCTGGGGTTGGCGCCCCGGGAGCTGGCGGAGCGCG
GAGTCCGCATCGTCTCCAGAGGTAGGACGCAGCTTTTCGCCCTGAACCCGCGCAGCGGCACCTTGGTCAC
CGCGGGTAGGATAGACAGGGAGGAGCTCTGCGACAGATCTCCAAACTGTGTGACAAACCTGGAGATTCTT
CTAGAAGATACAGTGAAGATTTTGCGGGTAGAGGTGGAAATAATCGATGTTAATGATAACCCACCCAGTT
TTGGGACAGAACAGAGGGAAATAAAAGTTGCTGAAAATGAAAATCCTGGGGCAAGATTTCCTCTTCCTGA
AGCTTTTGATCCGGATGTAGGTGTAAACTCCCTGCAGGGTTACCAGCTCAACTCAAACGGTTACTTTTCC
CTGGACGTGCAAAGTGGGGCCGATGGGATTAAGTACCCAGAGCTGGTGCTGGAACGCGCTCTAGATCGCG
AGGAAGAGGCGGTTCACCACCTCGTTCTCACGGCCTTCGATGGAGGTGACCCGGTTCGCTCTGGCACTGC
CAGGATTCTCATAATACTTGTGGATACCAACGATAATGCTCCCGTGTTCACTCAGCCCGAGTACCACGTA
AGTGTTCGTGAGAACGTTCCTGTAGGCACTCGGCTACTCACCGTAAAAGCCACTGATCCAGATGAAGGAG
CCAATGGAGACGTGACGTATTCTTTCCGGAAAGTAAGAGACAAAATATCACAGCTATTTCAGTTGAATTC
TCTGAGTGGGGATATAACAATATTGGGGGGTCTAGATTATGAGGACTCTGGATTCTATGACATAGATGTA
GAAGCCCATGATGGGCCTGGTCTCCGAGCTAGAAGCAAGGTACTGGTGACAGTTCTGGATGAAAATGACA
ACGCACCAGAAGTCACAGTTACATCTCTCACCAGCTCAGTCCAGGAATCTTCTTCCCCGGGTACAGTAAT
TGCACTTTTCAACGTGCATGACAGTGACTCAGGAGGAAATGGCCTAGTCACATGTTCTATTCCAGATAAT
CTGCCATTCACACTTGAAAAGACCTATGGAAATTATTATCGGTTGTTGACACACAGAACACTGGACAGGG
AAGAAGTCTCAGAATATAACATCACTGTAACTGCCACTGACCAGGGAACTCCTCCACTGTCTACAGAAAC
TCATATTTCACTGCAAGTGATGGACATCAATGACAACCCACCCACTTTCCCTCATGCTTCCTACTCTGCT
TACATTCCTGAAAACAACCCCAGAGGAGCCTCCATCTTATCTATGACTGCTCAAGACCCTGACAGTGGTG
ACAATGCCCGAATCACTTACTCCCTGGCCGAAGACACCTTCCAGGGTGCACCTCTGTCCTCCTATGTCTC
CATCAACTCCAATACAGGGATCCTATATGCTCTTTGCTCCTTCGACTATGAGCAGTTTAGAGACCTGCAG
CTGCTGATGACAGCCAGTGACAGTGGAGACCCTCCACTCAGCAGCAATGTGTCACTGAGCCTCTTTGTGC
TGGACCAGAACGACAATGTCCCTGAGATCCTGTACCCCACCTTCCCTACTGATGGCTCCACTGGTGTGGA
GCTGGCACCCCGCTCCGCAGATTCCGGCTACCTGGTGACCAAAGTGGTGGCAGTGGACAGAGACTCAGGT
CAGAATGCCTGGCTGTCCTACAGCCTACTCAAGTCCAGCGAGCCGGGACTATTTGCAGTGGGGCTGCACA
CAGGCGAGGTGCGCACCGCACGGGCCCTGCTGGACAGAGACGCGCTCAAGCAGAGGCTTGTAGTGGTCGT
CCAGGACCATGGCCAGCCCCCTCTCTCGGCCACCGTCACACTCACTGTGGCTGTGGCCGACAGCATCCCA
GATGTCCTGGCTGACTTGGGCAGCCTCAAGCCTTCAGCAGACCCAGACGACTCGGGCCTCACACTCTATC
TCGTGGTGGCAGTGGCCGCTGTCTCCTGCGTCTTCCTGGCTTTTGTCACGGTGCTGCTAGCACTCAAGCT
GAGACGCTGGCACAAGTCACGCCTGCTTCACGCTGAAGGCAGCAGGTTGGCAGGTGTGCCTGCCTCGCAC
TTTGTGGGCGTGGACGGGGTTCGGGCTTTCCTGCAGACCTATTCCCACGAGGTCTCCCTCACCGCGGACT
CGCGGAAGAGTCACCTGATCTTCTCCCAACCCAGCTATGCAGACACGCTCATCAGCCGGGAGAGTTGTGA
GAAAAGCGAGCCTCTTCTGATAACTCAGGATTTACTTGAAACAAAAGGAGACCCTAATCTTCAGCAAGCC
CCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATG
ACACCGGCACCTGGCCCAACAACCAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAG
TGAAGCTGCTGATGGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGA
CCCCAGTTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACAC
TGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGG
CAAGAAGGAGAAGAAGTAA

Translation (962 aa):
MHFILDPEDPGAPQASTEGKPKHRRLRGGVVMAAPPARPDHTRLLQICLLLGVLVEIRAEQILYSVFEEQ
EEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEIL
LEDTVKILRVEVEIIDVNDNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFS
LDVQSGADGIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHV
SVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDIDV
EAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGGNGLVTCSIPDN
LPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSA
YIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQ
LLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSG
QNAWLSYSLLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIP
DVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLAGVPASH
FVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEKSEPLLITQDLLETKGDPNLQQA
PPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG
PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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