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Report for CCDS5909.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5909.1 Public Homo sapiens 7 TMEM176A 24 110 108 CCDS HistoryNCBI Gene:55365Re-query CCDS DB by CCDS ID:5909.1Re-query CCDS DB by GeneID:55365See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5909.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000004103.8 ENSP00000004103.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000004103.8Link to Ensembl Protein Viewer:ENSP00000004103.3Re-query CCDS DB by Nucleotide ID:ENST00000004103Re-query CCDS DB by Protein ID:ENSP00000004103
Original member Current member EBI ENST00000484928.5 ENSP00000417626.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000484928.5Link to Ensembl Protein Viewer:ENSP00000417626.1Re-query CCDS DB by Nucleotide ID:ENST00000484928Re-query CCDS DB by Protein ID:ENSP00000417626
Original member Current member NCBI NM_018487.3 NP_060957.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018487.3Link to Protein Sequence:NP_060957.2Re-query CCDS DB by Nucleotide ID:NM_018487Re-query CCDS DB by Protein ID:NP_060957Link to BLAST:NP_060957.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060957.2 235 Q96HP8 235 100% 0 0

Chromosomal Locations for CCDS 5909.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 150801551 150801724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 150802215 150802325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 150803400 150803456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 150803620 150803832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 150804362 150804472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 150804827 150804868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGGAACAGCCGACAGTGATGAGATGGCCCCGGAGGCCCCACAGCACACCCACATCGATGTGCACATCC
ACCAGGAGTCTGCCCTGGCCAAGCTCCTGCTCACCTGCTGCTCTGCGCTGCGGCCCCGGGCCACCCAGGC
CAGGGGCAGCAGCCGGCTGCTGGTGGCCTCGTGGGTGATGCAGATCGTGCTGGGGATCTTGAGTGCAGTC
CTAGGAGGATTTTTCTACATCCGCGACTACACCCTCCTCGTCACCTCGGGAGCTGCCATCTGGACAGGGG
CTGTGGCTGTGCTGGCTGGAGCTGCTGCCTTCATTTACGAGAAACGGGGTGGTACATACTGGGCCCTGCT
GAGGACTCTGCTAACGCTGGCAGCTTTCTCCACAGCCATCGCTGCCCTCAAACTTTGGAATGAAGATTTC
CGATATGGCTACTCTTATTACAACAGTGCCTGCCGCATCTCCAGCTCGAGTGACTGGAACACTCCAGCCC
CCACTCAGAGTCCAGAAGAAGTCAGAAGGCTACACCTATGTACCTCCTTCATGGACATGCTGAAGGCCTT
GTTCAGAACCCTTCAGGCCATGCTCTTGGGTGTCTGGATTCTGCTGCTTCTGGCATCTCTGACCCCTCTG
TGGCTGTACTGCTGGAGAATGTTCCCAACCAAAGGGAAAAGAGACCAGAAGGAAATGTTGGAAGTGAGTG
GAATCTAG

Translation (235 aa):
MGTADSDEMAPEAPQHTHIDVHIHQESALAKLLLTCCSALRPRATQARGSSRLLVASWVMQIVLGILSAV
LGGFFYIRDYTLLVTSGAAIWTGAVAVLAGAAAFIYEKRGGTYWALLRTLLTLAAFSTAIAALKLWNEDF
RYGYSYYNSACRISSSSDWNTPAPTQSPEEVRRLHLCTSFMDMLKALFRTLQAMLLGVWILLLLASLTPL
WLYCWRMFPTKGKRDQKEMLEVSGI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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