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Report for CCDS59110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59110.1 Public Homo sapiens 8 CTHRC1 24 110 108 CCDS HistoryNCBI Gene:115908Re-query CCDS DB by CCDS ID:59110.1Re-query CCDS DB by GeneID:115908See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59110.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000520337.1 ENSP00000430550.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520337.1Link to Ensembl Protein Viewer:ENSP00000430550.1Re-query CCDS DB by Nucleotide ID:ENST00000520337Re-query CCDS DB by Protein ID:ENSP00000430550
Original member Current member NCBI NM_001256099.2 NP_001243028.1 Accepted alive Link to Nucleotide Sequence:NM_001256099.2Link to Protein Sequence:NP_001243028.1Re-query CCDS DB by Nucleotide ID:NM_001256099Re-query CCDS DB by Protein ID:NP_001243028Link to BLAST:NP_001243028.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243028.1 229 Q96CG8-3 229 100% 0 0

Chromosomal Locations for CCDS 59110.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 103372552 103372659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103375738 103375959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103378027 103378243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103382458 103382600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGTGGCCGCCAGGTAGGAGCATCACAGTCAAGCTACGGGAGAAAACAGTTTCCAGGAAACTGGAAATGA
ACGGCCCGAGTGCTTTCCAGGGGCTCATCTGTGGGAAGTATAATGGAATGTGCTTACAAGGGCCAGCAGG
AGTGCCTGGTCGAGACGGGAGCCCTGGGGCCAATGGCATTCCGGGTACACCTGGGATCCCAGGTCGGGAT
GGATTCAAAGGAGAAAAGGGGGAATGTCTGAGGGAAAGCTTTGAGGAGTCCTGGACACCCAACTACAAGC
AGTGTTCATGGAGTTCATTGAATTATGGCATAGATCTTGGGAAAATTGCGGAGTGTACATTTACAAAGAT
GCGTTCAAATAGTGCTCTAAGAGTTTTGTTCAGTGGCTCACTTCGGCTAAAATGCAGAAATGCATGCTGT
CAGCGTTGGTATTTCACATTCAATGGAGCTGAATGTTCAGGACCTCTTCCCATTGAAGCTATAATTTATT
TGGACCAAGGAAGCCCTGAAATGAATTCAACAATTAATATTCATCGCACTTCTTCTGTGGAAGGACTTTG
TGAAGGAATTGGTGCTGGATTAGTGGATGTTGCTATCTGGGTTGGTACTTGTTCAGATTACCCAAAAGGA
GATGCTTCTACTGGATGGAATTCAGTTTCTCGCATCATTATTGAAGAACTACCAAAATAA

Translation (229 aa):
MWPPGRSITVKLREKTVSRKLEMNGPSAFQGLICGKYNGMCLQGPAGVPGRDGSPGANGIPGTPGIPGRD
GFKGEKGECLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACC
QRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKG
DASTGWNSVSRIIIEELPK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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