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Report for CCDS59196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59196.1 Public Homo sapiens 1 MEAF6 24 110 108 CCDS HistoryNCBI Gene:64769Re-query CCDS DB by CCDS ID:59196.1Re-query CCDS DB by GeneID:64769See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59196.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296214.10 ENSP00000296214.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296214.10Link to Ensembl Protein Viewer:ENSP00000296214.5Re-query CCDS DB by Nucleotide ID:ENST00000296214Re-query CCDS DB by Protein ID:ENSP00000296214
Original member Current member NCBI NM_001270875.3 NP_001257804.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001270875.3Link to Protein Sequence:NP_001257804.1Re-query CCDS DB by Nucleotide ID:NM_001270875Re-query CCDS DB by Protein ID:NP_001257804Link to BLAST:NP_001257804.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257804.1 191 Q9HAF1-1 191 100% 0 0

Chromosomal Locations for CCDS 59196.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37494099 37494107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37495885 37495918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37501804 37501996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37509278 37509323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37509455 37509542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37513423 37513538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37514657 37514746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGCGATGCACAACAAGGCGGCGCCGCCGCAGATCCCGGACACCCGGCGGGAGCTGGCGGAGCTCGTGA
AG
CGGAAGCAGGAGCTGGCGGAAACATTGGCAAATTTGGAGCGACAGATCTATGCTTTTGAGGGAAGCTA
C
CTGGAAGACACTCAGATGTATGGCAATATTATTCGTGGCTGGGATCGGTATCTGACCAACCAAAAAAAC
TCC
AATAGCAAAAATGATCGAAGGAACCGGAAGTTTAAGGAAGCTGAGCGGCTCTTCAGTAAATCCTCGG
TT
ACCTCAGCAGCTGCAGTAAGTGCATTGGCAGGAGTTCAGGACCAGCTCATTGAAAAGAGGGAGCCAGG
A
AGTGGGACGGAAAGTGACACTTCTCCAGACTTCCACAATCAGGAAAATGAGCCCAGCCAGGAGGACCCT
GAG
GATCTGGATGGATCTGTGCAGGGAGTGAAACCTCAGAAGGCTGCTTCTTCTACTTCCTCAGGGAGTC
AC
CACAGCAGCCATAAAAAGCGAAAGAATAAAAACCGGCACAGGATTGATCTGAAGTTAAACAAAAAACC
A
CGAGCTGACTATTAG


Translation (191 aa):
MAMHNKAAPPQIPDTRRELAELVKRKQELAETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQKN
S
NSKNDRRNRKFKEAERLFSKSSVTSAA
AVSALAGVQDQLIEKREPGSGTESDTSPDFHNQENEPSQEDP
E
DLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRH
RIDLKLNKKPRADY



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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