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Report for CCDS59375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59375.1 Public Homo sapiens 19 WTIP 24 110 108 CCDS HistoryNCBI Gene:126374Re-query CCDS DB by CCDS ID:59375.1Re-query CCDS DB by GeneID:126374See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59375.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000590071.7 ENSP00000466953.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000590071.7Link to Ensembl Protein Viewer:ENSP00000466953.2Re-query CCDS DB by Nucleotide ID:ENST00000590071Re-query CCDS DB by Protein ID:ENSP00000466953
Original member Current member NCBI NM_001080436.2 NP_001073905.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080436.2Link to Protein Sequence:NP_001073905.1Re-query CCDS DB by Nucleotide ID:NM_001080436Re-query CCDS DB by Protein ID:NP_001073905Link to BLAST:NP_001073905.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073905.1 430 A6NIX2 430 100% 0 0

Chromosomal Locations for CCDS 59375.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34481975 34482641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34490376 34490477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34493037 34493104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34493263 34493325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34493492 34493622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34494586 34494637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34495703 34495771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34500129 34500269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGCAGCGCTCCAGGGCGGGCGCGGACGAGGCGGCCCTACTCCTGGCCGGGCTGGCCCTGCGGGAGCTGG
AG
CCCGGGTGCGGCTCTCCCGGTCGGGGGCGGCGGGGGCCGCGGCCTGGGCCTGGAGACGAGGCGGCGCC
C
GCGCTGGGCCGCAGAGGGAAGGGCAGCGGCGGCCCCGAGGCCGGGGCGGACGGACTGAGCCGCGGGGAG
CGG
GGTCCCCGGCGCGCGGCGGTTCCGGAGCTCAGCGCGCAGCCTGCGGGCAGCCCACGGGCCAGCCTGG
CG
GGGTCCGACGGCGGCGGCGGTGGCGGCAGCGCCCGATCCAGCGGCATCAGCCTGGGCTACGACCAGCG
C
CACGGCAGCCCGCGCTCCGGTCGCTCGGACCCGCGTCCCGGTCCCGGGCCGCCTTCGGTGGGCAGCGCC
CGC
TCCAGCGTTTCCAGCCTCGGCTCCCGGGGCTCGGCCGGCGCCTACGCTGACTTCCTCCCGCCCGGCG
CC
TGCCCCGCGCCCGCTCGCTCCCCGGAGCCTGCGGGGCCGGCTCCCTTCCCGCTGCCTGCACTCCCGCT
G
CCCCCTGGCCGGGAGGGCGGCCCAAGCGCGGCCGAGCGGCGGCTGGAGGCGCTCACCCGGGAGCTGGAG
CGG
GCGCTCGAGGCGCGCACGGCGCGGGACTACTTCGGCATTTGCATCAAGTGTGGGCTTGGCATCTACG
GA
GCCCAGCAGGCGTGCCAGGCAATGGGGAGTCTTTATCACACTGACTGCTTCACCTGCGACTCGTGTGG
G
AGACGACTCCGTGGGAAGGCGTTCTACAACGTGGGTGAGAAAGTGTACTGCCAGGAGGACTTCCTGTAC
TCC
GGGTTCCAGCAGACGGCCGACAAATGCAGCGTGTGTGGACATCTCATCATGGAAATGATCCTGCAGG
CC
CTGGGCAAGTCCTACCACCCAGGCTGCTTCCGGTGCTCCGTGTGCAATGAGTGCCTGGACGGGGTTCC
C
TTCACCGTGGACGTGGAGAACAACATCTACTGCGTGCGAGACTATCACACGGTTTTTGCACCAAAATGC
GCC
TCCTGTGCCCGTCCTATCCTCCCTGCACAGGGCTGCGAGACAACCATCCGTGTGGTGTCCATGGACA
GA
GACTACCACGTGGCATGTTACCACTGTGAGGACTGCGGGCTGCAGCTGAGCGGGGAGGAGGGACGCCG
T
TGCTATCCCCTGGCGGGCCACCTACTGTGTCGTCGTTGCCACCTGCGGCGCCTCCAACCTGGGCCTCTT
CCC
TCACCCACTGTGCACGTCACTGAGCTCTGA


Translation (430 aa):
MQRSRAGADEAALLLAGLALRELEPGCGSPGRGRRGPRPGPGDEAAPALGRRGKGSGGPEAGADGLSRGE
R
GPRRAAVPELSAQPAGSPRASLAGSDGGGGGGSARSSGISLGYDQRHGSPRSGRSDPRPGPGPPSVGSA
R
SSVSSLGSRGSAGAYADFLPPGACPAPARSPEPAGPAPFPLPALPLPPGREGGPSAAERRLEALTRELE
R
ALEARTARDYF
GICIKCGLGIYGAQQACQAMGSLYHTDCFTCDSCGRRLRGKAFYNVGEKVYCQEDFLY
S
GFQQTADKCSVCGHLIMEM
ILQALGKSYHPGCFRCSVCNECLDGVPFTVDVENNIYCVRDYHTVFAPKC
A
SCARPILPAQ
GCETTIRVVSMDRDYHVACYHCEDCGLQLSGEEGRRCYPLAGHLLCRRCHLRRLQPGPL
P
SPTVHVTEL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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