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Report for CCDS5950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5950.1 Public Homo sapiens 7 VIPR2 24 110 108 CCDS HistoryNCBI Gene:7434Re-query CCDS DB by CCDS ID:5950.1Re-query CCDS DB by GeneID:7434See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5950.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262178.7 ENSP00000262178.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262178.7Link to Ensembl Protein Viewer:ENSP00000262178.2Re-query CCDS DB by Nucleotide ID:ENST00000262178Re-query CCDS DB by Protein ID:ENSP00000262178
Original member Current member NCBI NM_003382.5 NP_003373.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003382.5Link to Protein Sequence:NP_003373.2Re-query CCDS DB by Nucleotide ID:NM_003382Re-query CCDS DB by Protein ID:NP_003373Link to BLAST:NP_003373.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003373.2 438 P41587-1 438 100% 0 0

Chromosomal Locations for CCDS 5950.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 159030616 159030789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159031828 159031869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159031938 159032067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159034213 159034304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159034581 159034650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159035952 159036012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159036752 159036902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159043035 159043176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159058481 159058578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159103757 159103854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159109812 159109919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159142446 159142545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 159144721 159144771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGCGGACGCTGCTGCCTCCCGCGCTGCTGACCTGCTGGCTGCTCGCCCCCGTGAACAGCATTCACCCAG
AATGCCGATTTCATCTGGAAATACAGGAGGAAGAAACAAAATGTGCAGAGCTTCTGAGGTCTCAAACAGA
AAAACACAAAGCCTGCAGTGGCGTCTGGGACAACATCACGTGCTGGCGGCCTGCCAATGTGGGAGAGACC
GTCACGGTGCCCTGCCCAAAAGTCTTCAGCAATTTTTACAGCAAAGCAGGAAACATAAGCAAAAACTGTA
CGAGTGACGGATGGTCAGAGACGTTCCCAGATTTCGTCGATGCCTGTGGCTACAGCGACCCGGAGGATGA
GAGCAAGATCACGTTTTATATTCTGGTGAAGGCCATTTATACACTGGGCTACAGTGTCTCTCTGATGTCT
CTTGCAACAGGAAGCATAATTCTGTGCCTCTTCAGGAAGCTGCACTGCACCAGGAATTACATCCACCTGA
ACCTGTTCCTGTCCTTCATCCTGAGAGCCATCTCAGTGCTGGTCAAGGACGACGTTCTCTACTCCAGCTC
TGGCACGTTGCACTGCCCTGACCAGCCATCCTCCTGGGTGGGCTGCAAGCTGAGCCTGGTCTTCCTGCAG
TACTGCATCATGGCCAACTTCTTCTGGCTGCTGGTGGAGGGGCTCTACCTCCACACCCTCCTGGTGGCCA
TGCTCCCCCCTAGAAGGTGCTTCCTGGCCTACCTCCTGATCGGATGGGGCCTCCCCACCGTCTGCATCGG
TGCATGGACTGCGGCCAGGCTCTACTTAGAAGACACCGGTTGCTGGGATACAAACGACCACAGTGTGCCC
TGGTGGGTCATACGAATACCGATTTTAATTTCCATCATCGTCAATTTTGTCCTTTTCATTAGTATTATAC
GAATTTTGCTGCAGAAGTTAACATCCCCAGATGTCGGCGGCAACGACCAGTCTCAGTACAAGAGGCTGGC
CAAGTCCACGCTCCTGCTTATCCCGCTGTTCGGCGTCCACTACATGGTGTTTGCCGTGTTTCCCATCAGC
ATCTCCTCCAAATACCAGATACTGTTTGAGCTGTGCCTCGGGTCGTTCCAGGGCCTGGTGGTGGCCGTCC
TCTACTGTTTCCTGAACAGTGAGGTGCAGTGCGAGCTGAAGCGAAAATGGCGAAGCCGGTGCCCGACCCC
GTCCGCGAGCCGGGATTACAGGGTCTGCGGTTCCTCCTTCTCCCGCAACGGCTCGGAGGGCGCCCTGCAG
TTCCACCGCGGCTCCCGCGCCCAGTCCTTCCTGCAAACGGAGACCTCGGTCATCTAG

Translation (438 aa):
MRTLLPPALLTCWLLAPVNSIHPECRFHLEIQEEETKCAELLRSQTEKHKACSGVWDNITCWRPANVGET
VTVPCPKVFSNFYSKAGNISKNCTSDGWSETFPDFVDACGYSDPEDESKITFYILVKAIYTLGYSVSLMS
LATGSIILCLFRKLHCTRNYIHLNLFLSFILRAISVLVKDDVLYSSSGTLHCPDQPSSWVGCKLSLVFLQ
YCIMANFFWLLVEGLYLHTLLVAMLPPRRCFLAYLLIGWGLPTVCIGAWTAARLYLEDTGCWDTNDHSVP
WWVIRIPILISIIVNFVLFISIIRILLQKLTSPDVGGNDQSQYKRLAKSTLLLIPLFGVHYMVFAVFPIS
ISSKYQILFELCLGSFQGLVVAVLYCFLNSEVQCELKRKWRSRCPTPSASRDYRVCGSSFSRNGSEGALQ
FHRGSRAQSFLQTETSVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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