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Report for CCDS5979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5979.1 Public Homo sapiens 8 MTMR9 24 110 108 CCDS HistoryNCBI Gene:66036Re-query CCDS DB by CCDS ID:5979.1Re-query CCDS DB by GeneID:66036See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5979.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221086.8 ENSP00000221086.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221086.8Link to Ensembl Protein Viewer:ENSP00000221086.3Re-query CCDS DB by Nucleotide ID:ENST00000221086Re-query CCDS DB by Protein ID:ENSP00000221086
Original member Current member NCBI NM_015458.4 NP_056273.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015458.4Link to Protein Sequence:NP_056273.2Re-query CCDS DB by Nucleotide ID:NM_015458Re-query CCDS DB by Protein ID:NP_056273Link to BLAST:NP_056273.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056273.2 549 Q96QG7-1 549 100% 0 0

Chromosomal Locations for CCDS 5979.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 11284889 11285070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11295194 11295302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11300023 11300148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11304841 11305014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11306190 11306407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11309527 11309688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11314923 11315064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11316673 11316893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11319687 11319838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11322625 11322788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGGAGTTTGCGGAGCTGATTAAGACCCCGCGGGTGGACAATGTGGTGCTGCACCGGCCTTTCTACCCGG
CTGTCGAGGGCACCCTGTGCCTGACGGGCCACCACTTGATCCTGTCCTCCCGGCAGGACAATACGGAGGA
GCTGTGGCTCCTCCATTCAAACATCGACGCCATCGACAAGCGATTTGTAGGATCACTGGGTACCATCATC
ATAAAATGTAAAGATTTTCGAATTATTCAGTTGGATATTCCTGGAATGGAGGAATGCTTGAATATAGCCA
GTTCCATTGAGGCATTGTCTACTCTGGACTCCATCACTCTGATGTACCCTTTCTTTTACCGTCCTATGTT
TGAAGTGATAGAAGATGGCTGGCATTCCTTCCTTCCTGAGCAAGAATTTGAACTCTATTCTTCAGCTACC
AGTGAATGGAGGCTAAGCTATGTCAATAAGGAATTTGCTGTCTGTCCCTCTTACCCACCAATTGTCACAG
TGCCCAAATCCATCGATGATGAAGCTCTTCGGAAGGTAGCTACATTTCGACATGGAGGGCGCTTCCCAGT
ACTAAGCTATTACCACAAAAAAAATGGGATGGTAATTATGCGAAGTGGTCAGCCACTCACTGGTACAAAC
GGGAGGAGGTGCAAGGAGGACGAGAAGCTGATAAATGCTACCCTCAGGGCTGGAAAGCGTGGCTACATCA
TTGACACCCGATCCCTGAACGTGGCTCAGCAAACTAGAGCCAAAGGAGGTGGCTTTGAACAAGAAGCTCA
TTATCCTCAGTGGAGGCGAATTCATAAGTCCATTGAGAGGTATCACATTCTTCAGGAGAGCTTAATCAAA
CTTGTGGAAGCTTGTAATGACCAAACACATAACATGGACCGATGGCTCAGTAAATTGGAGGCCTCTAACT
GGCTGACTCACATCAAAGAGATTCTGACAACTGCCTGCCTAGCGGCTCAGTGCATCGACAGGGAAGGAGC
ATCAATATTGATTCACGGAACAGAAGGAACTGATTCCACACTCCAGGTGACCTCCTTGGCCCAGATCATC
TTAGAGCCAAGAAGCAGGACCATTCGTGGTTTTGAGGCCCTGATTGAAAGAGAGTGGCTGCAGGCTGGTC
ACCCATTCCAGCAGCGCTGTGCACAGTCAGCCTACTGTAACACCAAGCAGAAGTGGGAGGCTCCTGTATT
TCTTCTCTTCTTGGACTGCGTGTGGCAGATCCTTCGTCAGTTTCCCTGTTCTTTTGAGTTTAATGAGAAT
TTCCTCATCATGCTCTTTGAGCATGCTTATGCCTCACAGTTTGGAACATTTCTGGGCAACAATGAAAGTG
AAAGATGTAAGTTGAAGCTACAGCAGAAGACGATGTCTTTGTGGTCCTGGGTTAATCAGCCCAGTGAGCT
GAGTAAATTCACCAATCCCCTCTTTGAAGCCAACAACCTTGTCATCTGGCCTTCAGTTGCTCCGCAGAGT
CTTCCACTGTGGGAAGGTATTTTCCTACGTTGGAATAGATCCTCTAAGTATTTGGATGAAGCATATGAAG
AAATGGTTAACATCATTGAATATAATAAAGAATTACAAGCAAAAGTCAATATCCTTCGAAGGCAGTTGGC
AGAACTGGAAACAGAGGACGGGATGCAGGAGAGTCCCTGA

Translation (549 aa):
MEFAELIKTPRVDNVVLHRPFYPAVEGTLCLTGHHLILSSRQDNTEELWLLHSNIDAIDKRFVGSLGTII
IKCKDFRIIQLDIPGMEECLNIASSIEALSTLDSITLMYPFFYRPMFEVIEDGWHSFLPEQEFELYSSAT
SEWRLSYVNKEFAVCPSYPPIVTVPKSIDDEALRKVATFRHGGRFPVLSYYHKKNGMVIMRSGQPLTGTN
GRRCKEDEKLINATLRAGKRGYIIDTRSLNVAQQTRAKGGGFEQEAHYPQWRRIHKSIERYHILQESLIK
LVEACNDQTHNMDRWLSKLEASNWLTHIKEILTTACLAAQCIDREGASILIHGTEGTDSTLQVTSLAQII
LEPRSRTIRGFEALIEREWLQAGHPFQQRCAQSAYCNTKQKWEAPVFLLFLDCVWQILRQFPCSFEFNEN
FLIMLFEHAYASQFGTFLGNNESERCKLKLQQKTMSLWSWVNQPSELSKFTNPLFEANNLVIWPSVAPQS
LPLWEGIFLRWNRSSKYLDEAYEEMVNIIEYNKELQAKVNILRRQLAELETEDGMQESP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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